View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_111 (Length: 229)
Name: NF11980_high_111
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_111 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 7168629 - 7168405
Alignment:
| Q |
6 |
aacatttcccacttcaagattgttgtgcttgtcctgaattgcttgtgaacaagaagaagacccatgaaaagtatttgtcttcattagttttgaagatttt |
105 |
Q |
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| T |
7168629 |
aacatttcccacttcaagattgttgtgcttgtcctgaattgcttgtgaacaagaagaagacccatgaaaagtatttgtcttcattagttttgaagatttt |
7168530 |
T |
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| Q |
106 |
atttcagcctagaaataataaacagtgataaaatatttattcaagattgaat-nnnnnnnttatatatgtagcaannnnnnnaaaggaaaatcattgtag |
204 |
Q |
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| T |
7168529 |
atttcagcctagaaataataaacagtgataaaatatttattcaagattgaataaaaaaaattatatatgtagcaatttttttaaaggaaaatcattgtag |
7168430 |
T |
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| Q |
205 |
caacattatcattaaatatgatgca |
229 |
Q |
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| T |
7168429 |
caacattatcattaaatatgatgca |
7168405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 7178328 - 7178292
Alignment:
| Q |
193 |
aaatcattgtagcaacattatcattaaatatgatgca |
229 |
Q |
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| T |
7178328 |
aaatcattgtagcaacattatcattaaatatgatgca |
7178292 |
T |
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