View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_113 (Length: 214)
Name: NF11980_high_113
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_113 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 1716884 - 1717097
Alignment:
| Q |
1 |
ccttttcttctaattccaaactcattgttgaggccgctcaaacaagtgcctcatgaagtgttatatcacttctggaattaaatatcagctctaaaactaa |
100 |
Q |
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| T |
1716884 |
ccttttcttctaattccaaactcattgttgaggccgctcaaacaagtgcctcatgaagtgttatatcacttctggaattaaatatcagctctaaaactaa |
1716983 |
T |
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| Q |
101 |
agtagcttaattggaatcatacatttctccaaggccagccacaaagattgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatg |
200 |
Q |
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| T |
1716984 |
agtagcttaattggaatcatacatttctccaaggccagccacaaagactgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatg |
1717083 |
T |
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| Q |
201 |
ctcacaaatatctt |
214 |
Q |
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| T |
1717084 |
ctcacaaatatctt |
1717097 |
T |
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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 42221423 - 42221514
Alignment:
| Q |
25 |
ttgttgaggccgctcaaacaagtgcctcatgaagtgttatatcacttctggaattaaatatcagctctaaaactaaagtagcttaattggaa |
116 |
Q |
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| T |
42221423 |
ttgttgacgccgctcaaacaagtgcctcatgaagtgtaatatcacttttggaattaaatatcagctctaaaactaaagtagcttaattggaa |
42221514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 42221712 - 42221808
Alignment:
| Q |
118 |
catacatttctccaaggccagccacaaagattgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatgctcacaaatatctt |
214 |
Q |
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| T |
42221712 |
catacacttctccaagatcagccacaaatactgctagaaaccattttgtttaacaatgatgctcggaaaaattgaatgttatgctgacaaatatctt |
42221808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 42555682 - 42555729
Alignment:
| Q |
81 |
aatatcagctctaaaactaaagtagcttaattggaatcatacatttct |
128 |
Q |
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| T |
42555682 |
aatatcagctctcaaaataaaatagcttaattggaatcatacctttct |
42555729 |
T |
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