View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_116 (Length: 205)
Name: NF11980_high_116
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_116 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 24 - 195
Target Start/End: Original strand, 42449372 - 42449543
Alignment:
| Q |
24 |
cggcaccaaggttcgaggtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtag |
123 |
Q |
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| T |
42449372 |
cggcaccaaggttcgaggtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtaa |
42449471 |
T |
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| Q |
124 |
tttgttgattactgaagtatgtgctttctccacttcttccaaaagtagcacactgtttggccttcttctcac |
195 |
Q |
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| T |
42449472 |
tttgttgattactgaagtatgtgctttctccacttcttccaaaagtagcacactgtttggccttcttctcac |
42449543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 742247 - 742413
Alignment:
| Q |
29 |
ccaaggttcgaggtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtagtttgt |
128 |
Q |
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| T |
742247 |
ccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgt |
742346 |
T |
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| Q |
129 |
tgattactgaagtatgtgctttctccacttcttccaaaagtagcacactgtttggccttcttctcac |
195 |
Q |
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| T |
742347 |
tgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcttctcac |
742413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 740153 - 740319
Alignment:
| Q |
28 |
accaaggttcgaggtcatgataatgaccatgttcgta-----aaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagta |
122 |
Q |
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| T |
740153 |
accaaggtttgaggtcatgataatgactgtgttcctatcctaaaatccacagttctgccttgtccatcagttagcctcccataatttaagacttcaagca |
740252 |
T |
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| Q |
123 |
gtttgttgattactgaagtatgtgctttctccacttcttccaaaagtagcacactgtttggccttct |
189 |
Q |
| |
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| |||| | ||| || |||||||||||||||||| || ||||||| |||||||| ||||||||| |
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| T |
740253 |
gagtgtttaatacagatatatgtgctttctccacttgctctaaaagtatcacactgtgtggccttct |
740319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 10046721 - 10046583
Alignment:
| Q |
32 |
aggttcgaggtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtagtttgttga |
131 |
Q |
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| T |
10046721 |
aggtttgaggtcatgataatgactgtgttcctaaaatccacagttcttccttggccatcagttaatcttccgtcatctaggacttgaagcagagtgttga |
10046622 |
T |
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| Q |
132 |
ttactgaagtatgtgctttctccacttcttccaaaagta |
170 |
Q |
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||| || |||||||||||||| ||||| || ||||||| |
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| T |
10046621 |
atacagatgtatgtgctttctctacttcatcaaaaagta |
10046583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 45468388 - 45468225
Alignment:
| Q |
26 |
gcaccaaggttcgaggtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtagtt |
125 |
Q |
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||||||||||| ||||||||||| || || |||| ||||||||||||||||||||||||| ||||| || || ||||| || |||| | || || |
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| T |
45468388 |
gcaccaaggttagaggtcatgatgatcacagtgtttctaaaatccacagttctgccttgtccgtcagtcaacctcccatcatccaagacttggagaagag |
45468289 |
T |
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| Q |
126 |
tgttgattactgaagtatgtgctttctccacttcttccaaaagtagcacactgtttggccttct |
189 |
Q |
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|||||| ||| || || ||||||||||| ||||| || || |||| ||||||| ||||||||| |
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| T |
45468288 |
tgttgaatacagatgtgtgtgctttctcaacttcatcaaagagtacaacactgtatggccttct |
45468225 |
T |
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