View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_119 (Length: 202)
Name: NF11980_high_119
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_119 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 48176216 - 48176400
Alignment:
| Q |
1 |
gcaatgttcatgtacatttattagtattgttatttatttagtacaaatattttcactcacgaatataaatttggaattcaaaacaaatagagagaatttt |
100 |
Q |
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| T |
48176216 |
gcaatgttcatgtacatttatcagtattgttatttatttagtacaaatattttcactcacgaatataaatttggaattcaaaacaaatagagagaatttt |
48176315 |
T |
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| Q |
101 |
gaaatactcagtaacccctttggaagtatatgcattgtgtatgcaatgaattgaaatcattctgatacggtgaagccttcctttg |
185 |
Q |
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| T |
48176316 |
gaaatactcagtaacccctttggaagtatatgcattgtgtatgcaatgaattgaaatcattctgatacggtgaagccttcctttg |
48176400 |
T |
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