View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_high_13 (Length: 546)

Name: NF11980_high_13
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_high_13
NF11980_high_13
[»] chr4 (34 HSPs)
chr4 (357-527)||(3437526-3437696)
chr4 (167-306)||(23906790-23906936)
chr4 (167-333)||(39754832-39755006)
chr4 (167-214)||(30807245-30807292)
chr4 (167-217)||(435876-435926)
chr4 (248-377)||(10775839-10775969)
chr4 (167-217)||(33226856-33226906)
chr4 (167-217)||(48174678-48174728)
chr4 (167-217)||(53707441-53707491)
chr4 (168-217)||(20917630-20917679)
chr4 (167-216)||(55768963-55769012)
chr4 (167-216)||(55833219-55833268)
chr4 (167-306)||(27450662-27450808)
chr4 (169-217)||(42037510-42037558)
chr4 (440-499)||(553767-553826)
chr4 (171-217)||(10776004-10776050)
chr4 (167-217)||(31960399-31960449)
chr4 (167-217)||(56374937-56374987)
chr4 (457-510)||(55907681-55907734)
chr4 (439-510)||(1755550-1755621)
chr4 (40-140)||(35555983-35556085)
chr4 (167-217)||(1777600-1777650)
chr4 (166-216)||(7092798-7092848)
chr4 (174-216)||(50286625-50286667)
chr4 (122-203)||(25867193-25867274)
chr4 (169-217)||(41427488-41427536)
chr4 (167-306)||(48623016-48623162)
chr4 (460-507)||(7308551-7308598)
chr4 (460-510)||(661855-661905)
chr4 (171-217)||(9940723-9940769)
chr4 (167-217)||(47265789-47265839)
chr4 (440-509)||(21833266-21833335)
chr4 (241-306)||(43433646-43433711)
chr4 (474-522)||(548000-548048)
[»] chr8 (19 HSPs)
chr8 (106-353)||(25985128-25985381)
chr8 (167-306)||(36544799-36544945)
chr8 (167-306)||(36565730-36565876)
chr8 (167-217)||(12492427-12492477)
chr8 (120-217)||(41444889-41444986)
chr8 (440-507)||(17642924-17642991)
chr8 (167-217)||(8880019-8880069)
chr8 (167-217)||(42854589-42854639)
chr8 (167-216)||(15215856-15215905)
chr8 (167-216)||(43732230-43732279)
chr8 (172-217)||(45332072-45332117)
chr8 (170-217)||(4033079-4033126)
chr8 (440-507)||(17635645-17635712)
chr8 (167-217)||(13984682-13984732)
chr8 (167-217)||(18849700-18849750)
chr8 (167-288)||(29735464-29735585)
chr8 (462-506)||(32151969-32152013)
chr8 (248-327)||(39760890-39760970)
chr8 (150-198)||(3285119-3285167)
[»] chr7 (23 HSPs)
chr7 (167-306)||(38606652-38606798)
chr7 (105-333)||(43793504-43793737)
chr7 (443-507)||(10615713-10615777)
chr7 (167-306)||(46356340-46356486)
chr7 (167-306)||(11593607-11593753)
chr7 (167-306)||(33350295-33350441)
chr7 (167-306)||(36651641-36651787)
chr7 (167-217)||(32630254-32630304)
chr7 (167-306)||(31004871-31005016)
chr7 (167-217)||(49028914-49028964)
chr7 (167-306)||(36869778-36869924)
chr7 (170-220)||(24177777-24177827)
chr7 (167-217)||(37616563-37616613)
chr7 (167-217)||(39906964-39907014)
chr7 (167-216)||(5843091-5843140)
chr7 (440-516)||(10169039-10169115)
chr7 (440-516)||(10176564-10176640)
chr7 (173-306)||(18637233-18637370)
chr7 (173-306)||(18650668-18650805)
chr7 (169-218)||(32484136-32484185)
chr7 (173-217)||(18608275-18608319)
chr7 (173-217)||(18626559-18626603)
chr7 (226-306)||(43281389-43281469)
[»] chr2 (18 HSPs)
chr2 (241-431)||(7292716-7292907)
chr2 (167-306)||(11992595-11992741)
chr2 (167-306)||(2610175-2610321)
chr2 (167-306)||(4807239-4807385)
chr2 (167-217)||(13148960-13149010)
chr2 (457-510)||(1036617-1036670)
chr2 (175-306)||(452111-452249)
chr2 (167-217)||(24584191-24584241)
chr2 (167-217)||(38453205-38453255)
chr2 (167-216)||(876779-876828)
chr2 (167-216)||(8180427-8180476)
chr2 (167-217)||(30743270-30743320)
chr2 (167-217)||(45368209-45368258)
chr2 (180-216)||(12904628-12904664)
chr2 (173-217)||(14769943-14769987)
chr2 (63-338)||(33594725-33595010)
chr2 (265-330)||(876842-876908)
chr2 (167-217)||(41763634-41763684)
[»] chr1 (21 HSPs)
chr1 (155-415)||(6640761-6641033)
chr1 (120-217)||(40419281-40419378)
chr1 (167-319)||(28528228-28528388)
chr1 (167-217)||(43240966-43241016)
chr1 (167-217)||(51601705-51601755)
chr1 (164-302)||(7921571-7921716)
chr1 (167-217)||(1210392-1210442)
chr1 (167-217)||(8671567-8671617)
chr1 (167-217)||(51441349-51441399)
chr1 (167-306)||(49347882-49348029)
chr1 (472-509)||(17352688-17352725)
chr1 (167-212)||(27445545-27445590)
chr1 (174-217)||(19936175-19936218)
chr1 (167-305)||(32083235-32083380)
chr1 (167-217)||(12807672-12807722)
chr1 (167-217)||(34827687-34827737)
chr1 (167-217)||(37463450-37463500)
chr1 (460-509)||(7555196-7555245)
chr1 (440-505)||(19467420-19467485)
chr1 (225-306)||(30202619-30202700)
chr1 (164-204)||(52421074-52421114)
[»] scaffold0570 (1 HSPs)
scaffold0570 (167-306)||(2759-2905)
[»] chr5 (26 HSPs)
chr5 (167-306)||(3394357-3394503)
chr5 (167-306)||(1288078-1288224)
chr5 (167-306)||(12492876-12493022)
chr5 (167-306)||(20318638-20318784)
chr5 (167-217)||(2076059-2076109)
chr5 (167-217)||(3301496-3301546)
chr5 (167-217)||(16347987-16348037)
chr5 (105-217)||(6368510-6368622)
chr5 (167-306)||(10638944-10639090)
chr5 (170-217)||(1274915-1274962)
chr5 (254-416)||(3096917-3097079)
chr5 (442-505)||(41886598-41886661)
chr5 (167-217)||(28977442-28977492)
chr5 (455-505)||(41900498-41900548)
chr5 (167-217)||(43558399-43558449)
chr5 (149-411)||(21915515-21915785)
chr5 (282-421)||(21952119-21952260)
chr5 (169-213)||(24178173-24178217)
chr5 (248-327)||(38578971-38579051)
chr5 (460-507)||(28532813-28532860)
chr5 (304-421)||(1525434-1525549)
chr5 (475-509)||(32268533-32268567)
chr5 (167-216)||(36200429-36200478)
chr5 (149-217)||(3096811-3096879)
chr5 (167-215)||(37124217-37124265)
chr5 (173-217)||(38579086-38579130)
[»] chr3 (19 HSPs)
chr3 (167-306)||(38849741-38849887)
chr3 (167-217)||(48221431-48221481)
chr3 (167-217)||(51448294-51448344)
chr3 (167-217)||(52138475-52138525)
chr3 (167-306)||(47542200-47542346)
chr3 (155-214)||(32490312-32490371)
chr3 (167-217)||(19736813-19736863)
chr3 (167-217)||(19757715-19757765)
chr3 (167-217)||(25191026-25191076)
chr3 (167-217)||(27917219-27917269)
chr3 (167-217)||(29817152-29817202)
chr3 (443-516)||(51763382-51763455)
chr3 (449-507)||(13469647-13469705)
chr3 (167-216)||(1470683-1470732)
chr3 (241-332)||(805630-805722)
chr3 (167-216)||(30345178-30345227)
chr3 (164-217)||(30724385-30724438)
chr3 (167-216)||(46145800-46145849)
chr3 (442-506)||(51113188-51113252)
[»] scaffold0171 (1 HSPs)
scaffold0171 (167-217)||(5839-5889)
[»] chr6 (19 HSPs)
chr6 (167-217)||(10100442-10100492)
chr6 (167-306)||(20428125-20428271)
chr6 (450-507)||(6417092-6417149)
chr6 (170-217)||(9706426-9706473)
chr6 (443-505)||(6423907-6423969)
chr6 (167-216)||(5631464-5631513)
chr6 (148-217)||(8811961-8812030)
chr6 (169-217)||(5258735-5258783)
chr6 (473-510)||(8913442-8913479)
chr6 (443-499)||(19633108-19633164)
chr6 (167-217)||(3632663-3632713)
chr6 (443-505)||(6395539-6395601)
chr6 (449-510)||(7132302-7132363)
chr6 (449-510)||(7135225-7135286)
chr6 (449-510)||(7138148-7138209)
chr6 (460-509)||(7993558-7993607)
chr6 (180-216)||(2689316-2689352)
chr6 (443-507)||(6593923-6593987)
chr6 (443-491)||(10579090-10579138)
[»] scaffold0024 (1 HSPs)
scaffold0024 (171-217)||(82372-82418)
[»] scaffold0896 (1 HSPs)
scaffold0896 (148-217)||(4407-4476)
[»] scaffold0113 (1 HSPs)
scaffold0113 (168-217)||(12183-12232)
[»] scaffold0018 (1 HSPs)
scaffold0018 (169-213)||(31117-31161)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 357 - 527
Target Start/End: Original strand, 3437526 - 3437696
Alignment:
Q  357 tggtaaaaccagtgatgttgttcctgacaaagtgttgggtgatgaagaaccaacacgaacttaaagtgagcgtagaagagttgccattcccacaaatcgg 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  3437526 tggtaaaaccagtgatgttgttcctgacaaagtgttgggtgatgaagaaccaacatgaacttaaagtgagcgtagaagagttgccattcccacaaatcag 3437625  T
Q  457 ttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaactttgattttctccatga 527  Q
    ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3437626 ttaagagctttctcccaaaagattacaactttgacctctctcagttgttccaactttgattttctccatga 3437696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 23906936 - 23906790
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  23906936 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcca 23906837  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||||||||    
T  23906836 tcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttt 23906790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 333
Target Start/End: Complemental strand, 39755006 - 39754832
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||||| |       ||| ||||| ||| | ||| |||||||||||| ||| ||    
T  39755006 aggtgaaagttgaagatcatatcataccacaagtcacacactttaaatatcatgggtctatagtacaaaacgacaaagaaatagaaggagatgtaaatca 39754907  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtg-tttatgtgttgcgaaagtaccgcttaagtt 333  Q
    | | ||||||| |  |||||||||||| |  ||||||||| ||| |||||||| ||||||| |||| ||||||||    
T  39754906 ttgaatccaagtttagtggttgaaatgaaccagtgcctcaagtgttttatgtgatgcgaaaataccacttaagtt 39754832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 30807245 - 30807292
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaat 214  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  30807245 aggtgaaagttggagatcatatcataccacaagttacacggtttaaat 30807292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 435876 - 435926
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  435876 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 435926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 377
Target Start/End: Complemental strand, 10775969 - 10775839
Alignment:
Q  248 agatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtg-tttatgtgttgcgaaagtaccgcttaagttagaggggaaattt 346  Q
    ||||| ||||||| | || ||| |||||||||||||||||| |||||||| |  || |||||||| |||||||| ||| || |||||  |||| ||||||    
T  10775969 agatgtaaaccatagaattcaaaatgggtggttgaaatggaggagtgccttacttgttttatgtgatgcgaaagcacccctcaagttgaagggaaaattt 10775870  T
Q  347 tatcggacaatggtaaaaccagtgatgttgt 377  Q
    ||| |||||| ||||| |||| |||||||||    
T  10775869 tattggacaacggtaagaccaatgatgttgt 10775839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 33226856 - 33226906
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  33226856 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 33226906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 48174728 - 48174678
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  48174728 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 48174678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 53707441 - 53707491
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  53707441 aggtgaaagttgaagatcatatcataccccaagttacacggtctaaatatc 53707491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 20917630 - 20917679
Alignment:
Q  168 ggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  20917630 ggtgaaagttgaagatcatatcataccataagttacacagtttaaatatc 20917679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 55769012 - 55768963
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  55769012 aggtgaaagttgaagatcatgtcataccacaagtaacacggtttaaatat 55768963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 55833268 - 55833219
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  55833268 aggtgaaagttgaagatcatgtcataccacaagtaacacggtttaaatat 55833219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 27450808 - 27450662
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||| |||||  |       |||||||||||| |  ||| |||||| ||||| ||| ||    
T  27450808 aggtgaaagttggagatcatatcataccccaagttacacagtttacatatcttgggtccatagtgcaaaatgatggagaaatagaagcagatgtaaatca 27450709  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||| ||||||    
T  27450708 tcgtattcaagctgggtggttgaaatggagaagagcctcaagtgttt 27450662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 42037510 - 42037558
Alignment:
Q  169 gtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  42037510 gtgaaatttgaagatcatatcatcccacaagttacacggtttaaatatc 42037558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 553826 - 553767
Alignment:
Q  440 ccattcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctca 499  Q
    |||||||| ||||| |||| |||||||| |||||||| ||||||||||||||||||||||    
T  553826 ccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctca 553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 10776050 - 10776004
Alignment:
Q  171 gaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||    
T  10776050 gaaagttggagatcatatcataccacaagttacatggtttaaatatc 10776004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 31960449 - 31960399
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  31960449 aggtgaaagttggagatcatatcataccccaatttacacggtttaaatatc 31960399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 56374937 - 56374987
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  56374937 aggtgaaagttggagagcatatcataccccaagttacacggtttaaatatc 56374987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 55907681 - 55907734
Alignment:
Q  457 ttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaac 510  Q
    ||||||||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  55907681 ttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaac 55907734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 1755621 - 1755550
Alignment:
Q  439 gccattcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaac 510  Q
    ||||||||||| ||  |||| | |||||| || ||||||||||||||||||||||||||||  |||||||||    
T  1755621 gccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaac 1755550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 35556085 - 35555983
Alignment:
Q  40 aggaagaattagatggatggttggacacttggagacaagacttaaaaacat--ggttttcacttaactagaatcaagacagggtatatgaaatgtaattt 137  Q
    |||||| |||| ||||  |||||||  |||||||||||| |||| ||||||  ||||||||||| | ||||| |||||||| | ||||| ||||||||||    
T  35556085 aggaaggattaaatgggaggttggagtcttggagacaagccttagaaacatatggttttcacttgagtagaagcaagacagagcatatggaatgtaattt 35555986  T
Q  138 tag 140  Q
    |||    
T  35555985 tag 35555983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 1777650 - 1777600
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| | ||||||||||||| ||||||||||| ||||||||||    
T  1777650 aggtgaaagttggaaatcatatcataccccaagttacacgttttaaatatc 1777600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 7092848 - 7092798
Alignment:
Q  166 taggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    ||||||||||||||||||||||||||| |  || |||||||||||||||||    
T  7092848 taggtgaaagttgaagatcatatcatatcttaaattacacggtttaaatat 7092798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 50286625 - 50286667
Alignment:
Q  174 agttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    ||||| ||||||||||||||| |||||||||||||||||||||    
T  50286625 agttggagatcatatcataccccaagttacacggtttaaatat 50286667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 25867193 - 25867274
Alignment:
Q  122 atatgaaatgtaattttagatattagcgaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttac 203  Q
    |||||||||||||||||||  |   ||||||| || ||| | || ||||||||||| |||||||||||| ||||||||||||    
T  25867193 atatgaaatgtaattttaggaaaaggcgaagcgttactagtttagaggtgaaagttcaagatcatatcacaccacaagttac 25867274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 41427488 - 41427536
Alignment:
Q  169 gtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||| ||||||||||||||||||| |||||||||||  |||||||||    
T  41427488 gtgaaaattgaagatcatatcataccccaagttacacgacttaaatatc 41427536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 48623162 - 48623016
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||| ||||||||||| ||| ||||||| ||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  48623162 aggtgaaagttggagagcatatcataccccaaattacacgatttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcca 48623063  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  |  |||||||||||||    
T  48623062 tcgtattcaagctgggtggttgaaatggagaaaagcctcaggtgttt 48623016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 507
Target Start/End: Complemental strand, 7308598 - 7308551
Alignment:
Q  460 cgagctttttcccaaaagattacaactttgacctctctcatttgttcc 507  Q
    |||||||| ||||| ||||||||||||||||||| ||||| |||||||    
T  7308598 cgagctttgtcccagaagattacaactttgacctgtctcacttgttcc 7308551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 510
Target Start/End: Complemental strand, 661905 - 661855
Alignment:
Q  460 cgagctttttcccaaaagattacaactttgacctctctcatttgttccaac 510  Q
    |||||||| |||||| | ||||||||||| |||||||||||||||| ||||    
T  661905 cgagctttctcccaatatattacaactttaacctctctcatttgttacaac 661855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 9940769 - 9940723
Alignment:
Q  171 gaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||||||  |||||| |||||||| ||||||||||||||    
T  9940769 gaaagttgaagatcacgtcatactacaagttaaacggtttaaatatc 9940723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 47265839 - 47265789
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| || |||||||||||| |||||||||  |||||||||||    
T  47265839 aggtgaaagttggaggtcatatcataccccaagttacatagtttaaatatc 47265789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 21833266 - 21833335
Alignment:
Q  440 ccattcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaa 509  Q
    |||||||| || || |||| |||| |||| | ||||| ||||| |||||||||||||||| |||||||||    
T  21833266 ccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaa 21833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 43433646 - 43433711
Alignment:
Q  241 tagaaggagatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    |||||| ||||| ||||||||| || |||| |||||| ||||||||||  || |||||||||||||    
T  43433646 tagaagcagatgtaaaccatcgtattcaagctgggtgattgaaatggagaagagcctcaggtgttt 43433711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 548048 - 548000
Alignment:
Q  474 aaagattacaactttgacctctctcatttgttccaactttgattttctc 522  Q
    |||| |||||||||||| |||||||| |||||||||| |||||| ||||    
T  548048 aaagtttacaactttgaactctctcacttgttccaacattgattctctc 548000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 106 - 353
Target Start/End: Original strand, 25985128 - 25985381
Alignment:
Q  106 agaatcaagacagggtatatgaaatgtaattttagatattagcgaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttacac 205  Q
    |||| |||||||| ||||||| ||||||| |||||  |   ||||||| ||||||   || ||||||||||||  |||||||||||||||||||||||||    
T  25985128 agaagcaagacagagtatatggaatgtaagtttagcaagaggcgaagcatttctagcttagaggtgaaagttg--gatcatatcataccacaagttacac 25985225  T
Q  206 ggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctc 298  Q
    |||||||||||   |       ||| |||||  | |  ||| |||||||||||| ||||||| | |||||| |||||| ||||||||||| |||||||||    
T  25985226 ggtttaaatatattggatctatagtacaaaaatatggagaaatagaaggagatgtaaaccattgaatccaaaatgggtagttgaaatggaggagtgcctc 25985325  T
Q  299 aggtg-tttatgtgttgcgaaagtaccgcttaagttagaggggaaattttatcgga 353  Q
    | ||| ||||| || |||| |||||||||| |||||| |||| |||||||||||||    
T  25985326 aagtgttttatatgatgcggaagtaccgctcaagttaaagggaaaattttatcgga 25985381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 36544799 - 36544945
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |        || ||||||||||  ||| |||||| ||||| ||  ||    
T  36544799 aggtgaaagttggagatcatatcataccccaagttacaaggtttaaatatcatggggctttcgtacaaaatgacggagaaatagaagcagatgtaagtca 36544898  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||| || |||||||||||||    
T  36544899 tcgtattcaagttgggtggttgaaatggataagagcctcaggtgttt 36544945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 36565876 - 36565730
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  36565876 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtcctttgtacaaaatgacggagaaatagaagcagatgtaagcca 36565777  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||||||||    
T  36565776 tcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttt 36565730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 12492477 - 12492427
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  12492477 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 12492427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 41444986 - 41444889
Alignment:
Q  120 gtatatgaaatgtaattttagatattagcgaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||| |||||||||||||  |   ||||||| |||||||  || ||||||||| || ||||||||||||||||||||||||  ||||||||||||    
T  41444986 gtatatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggtgaaaggtggagatcatatcataccacaagttacttggtttaaatatc 41444889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 17642924 - 17642991
Alignment:
Q  440 ccattcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttcc 507  Q
    |||||||||| ||| |||||| |||||| ||||| || |||||||||||||||||||||| |||||||    
T  17642924 ccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 8880069 - 8880019
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  8880069 aggtgaaagttgaaaatcatatcatatcccaagttacacggtttaaatatc 8880019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 42854639 - 42854589
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  42854639 aggtgaaaggtggagatcatatcataccccaagttacacggtttaaatatc 42854589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 15215905 - 15215856
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  15215905 aggtgaaagttggagatcatatcatacccaaagttacacggtttaaatat 15215856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 43732279 - 43732230
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  43732279 aggtgaaagttggagatcatatcatagcacaagtaacacggtttaaatat 43732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 45332117 - 45332072
Alignment:
Q  172 aaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  45332117 aaagttggagatcatgtcataccacaagttacacggtttaaatatc 45332072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 4033126 - 4033079
Alignment:
Q  170 tgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  4033126 tgaaagttggagatcatatcataccccaagttacacggtttaagtatc 4033079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 17635645 - 17635712
Alignment:
Q  440 ccattcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttcc 507  Q
    ||||||| || ||| ||||||||||||| ||||  || |||||||||||||||||||||| |||||||    
T  17635645 ccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 13984682 - 13984732
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||  ||||||||||||||||| |||| |||||||||||||||||    
T  13984682 aggtgaaagaagaagatcatatcataccccaagatacacggtttaaatatc 13984732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 18849750 - 18849700
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||| ||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  18849750 aggtaaaaattggagatcatatcataccccaagttacacggtttaaatatc 18849700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 288
Target Start/End: Original strand, 29735464 - 29735585
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacgagtgcaaaatgacgaggaactagaaggagatgcaaaccatcgcatc 266  Q
    |||||||||| | ||||||||||||||| ||||||| ||| ||||||  ||   ||| ||||||||||  ||| |||||| | ||| ||| ||||  ||     
T  29735464 aggtgaaagtgggagatcatatcataccccaagttatacgatttaaacgtccatagttcaaaatgacggagaaatagaagcatatgtaaatcatcttatt 29735563  T
Q  267 caagatgggtggttgaaatgga 288  Q
    |||| |||||||||||||||||    
T  29735564 caagttgggtggttgaaatgga 29735585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 506
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
Q  462 agctttttcccaaaagattacaactttgacctctctcatttgttc 506  Q
    |||||| |||||||| |||||||||||||||||||||| ||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 39760970 - 39760890
Alignment:
Q  248 agatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgtt-tatgtgttgcgaaagtaccgct 327  Q
    ||||||||||||||| || |||| |||||||||| |||||| ||  |||||||||||| |||||| | | |||||||||||    
T  39760970 agatgcaaaccatcgaattcaagttgggtggttgcaatggaggatggcctcaggtgttctatgtgatacaaaagtaccgct 39760890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 3285119 - 3285167
Alignment:
Q  150 aagcttttctaatgtataggtgaaagttgaagatcatatcataccacaa 198  Q
    |||| ||||||  ||| |||||||||||| |||||||||||||||||||    
T  3285119 aagcgtttctagcgtagaggtgaaagttggagatcatatcataccacaa 3285167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 38606652 - 38606798
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||||||||  |       ||| ||||||||||| ||| |||||| ||||| ||||||    
T  38606652 aggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttgggtccatagtacaaaatgacgaagaaatagaagcagatgtaaacca 38606751  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||| ||||||||    
T  38606752 tcgtattcaagctgggtggttgaaatggagaagagccttaggtgttt 38606798  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 105 - 333
Target Start/End: Complemental strand, 43793737 - 43793504
Alignment:
Q  105 tagaatcaagacagggtatatgaaatgtaattttagatattagcgaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttaca 204  Q
    ||||| |||||||| ||||| | ||||||| |||||  |   ||||||| |||| | |||| |||||||||||  ||||||||||||||||| |||||||    
T  43793737 tagaagcaagacagagtatacggaatgtaaatttagcaagaggcgaagcgtttcgagtgtagaggtgaaagttagagatcatatcataccactagttaca 43793638  T
Q  205 cggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcct 297  Q
    |  ||||||||||  |       ||| ||||||||||| ||| |||   |||||| ||||||||  ||| ||| | ||||||||||||||| |||| |||    
T  43793637 cattttaaatatcttgggtctatagtacaaaatgacgaagaaatag---gagatgtaaaccatcaaatctaagctaggtggttgaaatggaggagttcct 43793541  T
Q  298 caggtgt-ttatgtgttgcgaaagtaccgcttaagtt 333  Q
    ||||||| ||||||| || ||||||||||||||||||    
T  43793540 caggtgtattatgtgatgtgaaagtaccgcttaagtt 43793504  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 443 - 507
Target Start/End: Complemental strand, 10615777 - 10615713
Alignment:
Q  443 ttcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttcc 507  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 46356486 - 46356340
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  46356486 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtcctttgtacaaaatgacggagaaatagaagcagatgtaagcca 46356387  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||||||||    
T  46356386 tcgtattcaagttgggtggttgaaatggagaagagcctcaggtgttt 46356340  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 11593607 - 11593753
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||  |        || |||||||| |  ||| |||||| ||||| || |||    
T  11593607 aggtgaaagttgaagatcatatcataccccaagttagacggtttaaatatcttgggtccttcgtacaaaatgatggagaaatagaagcagatgtaagcca 11593706  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||||||||    
T  11593707 tcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttt 11593753  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 33350441 - 33350295
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  33350441 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatctagggtctttcgtacaaaatgacggagaaatagaagcagatgtaagcca 33350342  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||| ||||||    
T  33350341 tcgtattcaagctgggtggttgaaatggagaagagcctcaagtgttt 33350295  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 36651641 - 36651787
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  36651641 aggtgaaagttggagatcatatcataccccaagttacgcggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcca 36651740  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||||||||    
T  36651741 tcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttt 36651787  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 32630254 - 32630304
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  32630254 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 32630304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 31004871 - 31005016
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  31004871 aggtgaaagttggagatcatatcataccccaagttacac-gtttaaatatcttggctccttcgtacaaaatgacggagaaatagaagcagatgtaagcca 31004969  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||||||||    
T  31004970 tcgtattcaagttgggtggttgaaatggagaagagcctcaggtgttt 31005016  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 49028914 - 49028964
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  49028914 aggtgaaagttggagatcagatcataccccaagttacacggtttaaatatc 49028964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 36869924 - 36869778
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||| ||||||||||| ||| |||| |||||||||||||  |       ||| ||||||||||| ||| || ||| ||||| || |||    
T  36869924 aggtgaaagttggagagcatatcataccccaaattacgcggtttaaatatcttggatccatagtacaaaatgacgaagaaataaaagcagatgtaagcca 36869825  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||| ||||    
T  36869824 tcgtattcaagctgggtggttgaaatggagaagagcctcaggggttt 36869778  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 24177827 - 24177777
Alignment:
Q  170 tgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg 220  Q
    |||| |||| ||||||||||||||| ||| |||||||||||||||||||||    
T  24177827 tgaaggttggagatcatatcataccccaatttacacggtttaaatatcacg 24177777  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 37616563 - 37616613
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||||| || ||||||||||||||| ||||||||||| ||||||||||    
T  37616563 aggtgaaaggtggagatcatatcataccccaagttacacgatttaaatatc 37616613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 39907014 - 39906964
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||| | || |||||||||||||||||||    
T  39907014 aggtgaaagttggagatcatatcatatcccatgttacacggtttaaatatc 39906964  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 5843091 - 5843140
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    ||||||||||  | |||||||||||||||||||||||||| |||||||||    
T  5843091 aggtgaaagtcaacgatcatatcataccacaagttacacgatttaaatat 5843140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 516
Target Start/End: Original strand, 10169039 - 10169115
Alignment:
Q  440 ccattcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaactttgat 516  Q
    |||||||| ||||| |||| |||| ||| || ||||| |||| ||||||||||||||||| ||||||| || |||||    
T  10169039 ccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacattgat 10169115  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 516
Target Start/End: Original strand, 10176564 - 10176640
Alignment:
Q  440 ccattcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaactttgat 516  Q
    |||||||| ||||| |||| |||| ||| || ||||| |||| ||||||||||||||||| ||||||| || |||||    
T  10176564 ccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacattgat 10176640  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 18637233 - 18637370
Alignment:
Q  173 aagttgaagatcatatcataccacaagttacacggtttaaatatc--acg-----agtgcaaaatgacgaggaactagaaggagatgcaaaccatcgcat 265  Q
    |||||| ||||||||||||| ||||||||||||  ||||||||||  | |     ||| |||||||||| |||| ||||   ||||| ||||||||| ||    
T  18637233 aagttggagatcatatcatatcacaagttacacattttaaatatcttaagttgatagtacaaaatgacggggaaataga---agatgtaaaccatcgaat 18637329  T
Q  266 ccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||||| || |  ||||||||||| |||||||||| ||||||    
T  18637330 ccaagctgagcagttgaaatggaggagtgcctcatgtgttt 18637370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 18650668 - 18650805
Alignment:
Q  173 aagttgaagatcatatcataccacaagttacacggtttaaatatc--acg-----agtgcaaaatgacgaggaactagaaggagatgcaaaccatcgcat 265  Q
    |||||| ||||||||||||| ||||||||||||  ||||||||||  | |     ||| |||||||||| |||| ||||   ||||| ||||||||| ||    
T  18650668 aagttggagatcatatcatatcacaagttacacattttaaatatcttaagttgatagtacaaaatgacggggaaataga---agatgtaaaccatcgaat 18650764  T
Q  266 ccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||||| || |  ||||||||||| |||||||||| ||||||    
T  18650765 ccaagctgagcagttgaaatggaggagtgcctcatgtgttt 18650805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 32484136 - 32484185
Alignment:
Q  169 gtgaaagttgaagatcatatcataccacaagttacacggtttaaatatca 218  Q
    |||| |||| || ||||||||||||||||||||||||| ||||| |||||    
T  32484136 gtgagagttaaatatcatatcataccacaagttacacgatttaagtatca 32484185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 18608319 - 18608275
Alignment:
Q  173 aagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||| ||||||||||||| ||||||||||||  ||||||||||    
T  18608319 aagttggagatcatatcatatcacaagttacacattttaaatatc 18608275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 18626559 - 18626603
Alignment:
Q  173 aagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||| ||||||||||||| ||||||||||||  ||||||||||    
T  18626559 aagttggagatcatatcatatcacaagttacacattttaaatatc 18626603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 43281389 - 43281469
Alignment:
Q  226 aaaatgacgaggaactagaaggagatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    |||||||||  ||| |||||| ||||| ||| ||||| || |||| |||||||||||||||||  || |||||||| ||||    
T  43281389 aaaatgacggagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaatggagaagagcctcaggcgttt 43281469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 431
Target Start/End: Original strand, 7292716 - 7292907
Alignment:
Q  241 tagaaggagatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtg-tttatgtgttgcgaaagtaccgcttaagttagaggg 339  Q
    |||||||||||| ||||||||  ||||||| ||||||||||||||| | ||||| |||||||| ||||| || ||||||||||| ||| |||||  || |    
T  7292716 tagaaggagatgtaaaccatcaaatccaagttgggtggttgaaatgaaggagtgactcaggtgttttatatgatgcgaaagtactgctcaagttgaagag 7292815  T
Q  340 gaaattttatcggacaatggtaaaaccagtgatgttgttcctgacaaagtgttgggtgatgaagaaccaacacgaacttaaagtgagcgtag 431  Q
     |||||| ||  ||||| ||||| |||    ||||||| |  ||||| |||||||||| ||||||||||||| |||| |||| | |||||||    
T  7292816 aaaatttcatatgacaacggtaagaccgacaatgttgtacgggacaaggtgttgggtggtgaagaaccaacatgaacataaaataagcgtag 7292907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 11992741 - 11992595
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |       ||| |||||||| |  ||| |||||| ||||| ||| ||    
T  11992741 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcagatgtaaatca 11992642  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||||||||    
T  11992641 tcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttt 11992595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 2610175 - 2610321
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |        || |||||||||   ||| |||||| ||||| ||||||    
T  2610175 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacagagaaatagaagcagatgtaaacca 2610274  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||  || |||| |||||||||||||||||  || |||||||||||||    
T  2610275 tcatattcaagctgggtggttgaaatggagaagagcctcaggtgttt 2610321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 4807239 - 4807385
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  4807239 aggtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggtctttcgtacaaaatgacggagaaatagaagcagatgtaagcca 4807338  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || ||||||||||||||||||||||  || | |||||||||||    
T  4807339 tcgtattcaagatgggtggttgaaatggagaagagtctcaggtgttt 4807385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 13148960 - 13149010
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  13148960 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 13149010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 1036617 - 1036670
Alignment:
Q  457 ttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaac 510  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  1036617 ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaac 1036670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 175 - 306
Target Start/End: Complemental strand, 452249 - 452111
Alignment:
Q  175 gttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaaccatcgcatcc 267  Q
    |||| ||||||||||||||| ||||||||||||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||||| || |    
T  452249 gttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtattc 452150  T
Q  268 aagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| |||||||||||||||||  || |||||||||||||    
T  452149 aagctgggtggttgaaatggagaagagcctcaggtgttt 452111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 24584241 - 24584191
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  24584241 aggtgaaagttggagatcatatcagaccgcaagttacacggtttaaatatc 24584191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 38453255 - 38453205
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  38453255 aggtgaaagttggagatcatatcataccccaagttacacgatttaaatatc 38453205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 876779 - 876828
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  876779 aggtgaaagttggagatcatatcctaccacaagttacacagtttaaatat 876828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 8180427 - 8180476
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  8180427 aggtgaaagttggagatcatatcatactccaagttacacggtttaaatat 8180476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 30743270 - 30743320
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| |||||||| |||| | ||||||||||||||||||||||    
T  30743270 aggtgaaagttggagatcataccatatcccaagttacacggtttaaatatc 30743320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 45368258 - 45368209
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  45368258 aggtgaaagttggagatcatatcatacc-caaattacacggtttaaatatc 45368209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 12904628 - 12904664
Alignment:
Q  180 agatcatatcataccacaagttacacggtttaaatat 216  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12904628 agatcatatcatatcacaagttacacggtttaaatat 12904664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 14769943 - 14769987
Alignment:
Q  173 aagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||| ||||||||||||| || |||||||||||||||||||||    
T  14769943 aagttggagatcatatcatagcataagttacacggtttaaatatc 14769987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 338
Target Start/End: Complemental strand, 33595010 - 33594725
Alignment:
Q  63 gacacttggagacaagacttaaa--aacatggttttcacttaactagaatcaagacagggtatatgaaatgtaattttagatattagcgaagcttttcta 160  Q
    |||| ||||||||||| |||| |  || ||||||||| ||| ||||||| ||||| || |||||||| | ||||||||||  |   ||| ||  ||| ||    
T  33595010 gacaattggagacaagccttagagaaatatggttttcgcttgactagaagcaagatagagtatatgacaggtaattttagcaagaggcggagtgttttta 33594911  T
Q  161 atgtataggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc--acg-----agtgcaaaatgacgaggaactagaaggagatgc 253  Q
      ||| |||||||||||| || |||||||||||||  | |||||| |||||||||||  | |     ||| ||||| | ||  ||| ||||||||||||     
T  33594910 gcgtaaaggtgaaagttggagttcatatcataccagcatttacacagtttaaatatcttaggtatatagtacaaaacgtcggagaaatagaaggagatgt 33594811  T
Q  254 aaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtg-tttatgtgttgcgaaagtaccgcttaagttagagg 338  Q
    ||| ||||  || |||  ||||||||||| ||||| ||||| || ||||| |||| ||| ||||||| || |||||||||||||||    
T  33594810 aaaacatcaaattcaaactgggtggttgagatggaggagtgtcttaggtgttttaagtgatgcgaaaataacgcttaagttagagg 33594725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 876842 - 876908
Alignment:
Q  265 tccaagatgggtggttgaaatggatgagtgcctcaggtgttt-atgtgttgcgaaagtaccgcttaa 330  Q
    ||||||||  ||||| |||||||| |||||||||||| |||| ||||| |||||||| |||||||||    
T  876842 tccaagataagtggtagaaatggaggagtgcctcaggcgtttaatgtgatgcgaaagcaccgcttaa 876908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 41763684 - 41763634
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| |||| |||||||||| |||||| |||| ||||||||||    
T  41763684 aggtgaaagttggagattatatcataccccaagttgcacgatttaaatatc 41763634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 155 - 415
Target Start/End: Original strand, 6640761 - 6641033
Alignment:
Q  155 tttctaatgtataggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaagg 247  Q
    |||||| |||| |||||||||||  ||||||||| | ||||||||||||||||||||||||||  |       ||| |||||| | |  ||| |||||||    
T  6640761 tttctagtgtagaggtgaaagttagagatcatattacaccacaagttacacggtttaaatatcttgagtctatagtacaaaattatggagaaatagaagg 6640860  T
Q  248 agatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcc---tcaggtg-tttatgtgttgcgaaagtaccgcttaagttagaggggaaa 343  Q
    || || ||||||| | ||||||| |||||||||||||| || |||||||   | || || |||||||| | ||||||||||||||||||| || ||||||    
T  6640861 aggtgtaaaccattggatccaagttgggtggttgaaatagaggagtgcctaattagttgttttatgtgatccgaaagtaccgcttaagtt-gaagggaaa 6640959  T
Q  344 --ttttatcggacaatggtaaaaccagtgatgttgttcctgacaaagtgttgggtgatgaagaaccaacacgaa 415  Q
      |||||||||||||  ||||  ||   |||||||| |  | |||||||||||  |||||||||||||||||||    
T  6640960 ttttttatcggacaactgtaagtccgacgatgttgtacgaggcaaagtgttggacgatgaagaaccaacacgaa 6641033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 40419281 - 40419378
Alignment:
Q  120 gtatatgaaatgtaattttagatattagcgaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||| |||||||||||||  |   || |||| ||||||  ||| |||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  40419281 gtatatggaatgtaattttagcaaaaggcaaagcatttctagcgtaaaggtgaaagttggagatcatatcataccacaagttacacagtttaaatatc 40419378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 319
Target Start/End: Original strand, 28528228 - 28528388
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacgagtg-------caaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||||||  | ||        |||||  | |  ||| ||||||||| || ||||||    
T  28528228 aggtgaaagttggagatcatagcataccacaagttacacagtttaaatatcttgggtctatgttacaaaacaatggagaaatagaaggaggtgtaaacca 28528327  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtg-tttatgtgttgcgaaa 319  Q
    ||| |||| || |||||||||||||| || |||||||||||||| |||||||| |||||||    
T  28528328 tcgaatccgagctgggtggttgaaattgaggagtgcctcaggtgttttatgtgatgcgaaa 28528388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 43241016 - 43240966
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  43241016 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 43240966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 51601705 - 51601755
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  51601705 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 51601755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 302
Target Start/End: Original strand, 7921571 - 7921716
Alignment:
Q  164 tataggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaa 256  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||| |||||  |       ||| ||||| ||    ||| |||||||||||| |||    
T  7921571 tataggtgaaagttggagatcatatcttaccacaagttacacgatttatatatcttggatccatagtacaaaacgattgagaaatagaaggagatgtaaa 7921670  T
Q  257 ccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggt 302  Q
    |||||| || |||| ||||| ||||||||||||||| | |||||||    
T  7921671 ccatcgaattcaagttgggttgttgaaatggatgagggtctcaggt 7921716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 1210392 - 1210442
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||||    
T  1210392 aggtgaaagttggagatcatatcataccccaagttacacagtttaaatatc 1210442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 8671567 - 8671617
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||||||    
T  8671567 aggtgaaagttggagatcatatcataccctaagttacacggtttaaatatc 8671617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 51441399 - 51441349
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||||    
T  51441399 aggtgaaagttggagatcatatcataccccaagttacacagtttaaatatc 51441349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 49348029 - 49347882
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacac-ggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacc 258  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||||||||  |        || ||||||||||  ||| |||||| || || || ||    
T  49348029 aggtgaaagttggagatcatatcataccccaagttacactggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcaggtgtaagcc 49347930  T
Q  259 atcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    |||| || |||| |||||||||||||||||  || |||||||||||||    
T  49347929 atcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttt 49347882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 17352725 - 17352688
Alignment:
Q  472 caaaagattacaactttgacctctctcatttgttccaa 509  Q
    |||||||||||||| |||||||||||||||||||||||    
T  17352725 caaaagattacaacattgacctctctcatttgttccaa 17352688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 27445545 - 27445590
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaa 212  Q
    |||||||||||| ||||| ||||||||| |||||||||||||||||    
T  27445545 aggtgaaagttggagatcttatcataccccaagttacacggtttaa 27445590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 19936175 - 19936218
Alignment:
Q  174 agttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||    
T  19936175 agttggagatcatatcataccccaagttacatggtttaaatatc 19936218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 32083380 - 32083235
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| |||||| |||  ||||||||||  |       ||| ||||||||||  ||| |||| | | ||| ||| ||    
T  32083380 aggtgaaagttggagatcatatcataccccaagttgcacaatttaaatatcttgggtccatagtacaaaatgacggagaaatagaggcaaatgtaaatca 32083281  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgtt 305  Q
    ||| || |||| |||||||||||||||||  || ||||||||||||    
T  32083280 tcgtattcaagctgggtggttgaaatggagaagagcctcaggtgtt 32083235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 12807722 - 12807672
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||||||||| |||| |||||||| |||||||||||  ||||||||||    
T  12807722 aggtgaaagttgaggatcgtatcatactacaagttacacaatttaaatatc 12807672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 34827737 - 34827687
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||| | |||||||||||||||  |||||||| ||||||||||||    
T  34827737 aggtgaaagtgggagatcatatcataccctaagttacaaggtttaaatatc 34827687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 37463500 - 37463450
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||  | |||||||| |||||||||||    
T  37463500 aggtgaaagttggagatcatatcatactccgagttacacagtttaaatatc 37463450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 7555245 - 7555196
Alignment:
Q  460 cgagctttttcccaaaagattacaactttgacctctctcatttgttccaa 509  Q
    |||||||| |||||||| ||||||||||| ||||| |||| |||||||||    
T  7555245 cgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 505
Target Start/End: Original strand, 19467420 - 19467485
Alignment:
Q  440 ccattcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgtt 505  Q
    |||||||| ||||| |||| |||| |||  | ||||| |||||||||||||||||||||| |||||    
T  19467420 ccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 30202700 - 30202619
Alignment:
Q  225 caaaatgacgaggaactagaaggagatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||||||||||  ||| |||||| ||||| || |||||| || ||||  ||||||||||||||||  || |||||||||||||    
T  30202700 caaaatgacggagaaatagaagcagatgtaagccatcgtattcaagccgggtggttgaaatggagaagagcctcaggtgttt 30202619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 52421074 - 52421114
Alignment:
Q  164 tataggtgaaagttgaagatcatatcataccacaagttaca 204  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  52421074 tataggtgaaagttagagatcatatcatgccacaagttaca 52421114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 2905 - 2759
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |        || ||||||||||| ||| |||||| ||||| ||  ||    
T  2905 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacgaagaaatagaagcagatgtaagtca 2806  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||||||||    
T  2805 tcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttt 2759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 3394357 - 3394503
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |       ||| ||||||||||  ||| |||||| ||||| ||| ||    
T  3394357 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcagatgtaaatca 3394456  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||   | |||||||||||||    
T  3394457 tcgtattcaagctgggtggttgaaatggagatgagcctcaggtgttt 3394503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 1288224 - 1288078
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacga-------gtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  ||       || ||||||||||  ||| |||||| ||||| || |||    
T  1288224 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgagtccttcgtacaaaatgacggagaaatagaagcagatgtaagcca 1288125  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| ||| |||||||||||||  || |||||| ||||||    
T  1288124 tcgtattcaagttggatggttgaaatggagaagagcctcatgtgttt 1288078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 12493022 - 12492876
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  12493022 aggtaaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcca 12492923  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||||||||||||    
T  12492922 tcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttt 12492876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 20318638 - 20318784
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  20318638 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcca 20318737  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||  || |||| |||||||||||||||||  || |||||||||||||    
T  20318738 tcatattcaagctgggtggttgaaatggagaagagcctcaggtgttt 20318784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 2076109 - 2076059
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  2076109 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 2076059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 3301496 - 3301546
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  3301496 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 3301546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 16348037 - 16347987
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  16348037 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 16347987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 6368622 - 6368510
Alignment:
Q  105 tagaatcaagacagggtatatgaaatgtaattttagatattagcgaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttaca 204  Q
    ||||| ||||||| |||||||| | |||||||||||  |   | ||| | ||||||||||| ||||||||| || |||||||| ||||||||||||||||    
T  6368622 tagaagcaagacaaggtatatggattgtaattttagcaagaggtgaaacatttctaatgtagaggtgaaagatggagatcataacataccacaagttaca 6368523  T
Q  205 cggtttaaatatc 217  Q
    |  ||||||||||    
T  6368522 caatttaaatatc 6368510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 10638944 - 10639090
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| | ||||||||||||| ||||||||||||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  10638944 aggtgaaagttggaaatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcca 10639043  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||| || |||| |||||||||||||||||  || |||| ||||||||    
T  10639044 tcgtattcaagctgggtggttgaaatggagaagagccttaggtgttt 10639090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 1274915 - 1274962
Alignment:
Q  170 tgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  1274915 tgaaagttggagatcatatcataccccaagttacacggtttaaatatc 1274962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 416
Target Start/End: Original strand, 3096917 - 3097079
Alignment:
Q  254 aaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtg-tttatgtgttgcgaaagtaccgcttaagttagaggggaaattttatcgg 352  Q
    ||||||||  || |||| ||||||||||||||||||||| |||| ||||| |||||||| || |||| ||||||||||||| || || || ||||||||     
T  3096917 aaaccatcaaattcaagttgggtggttgaaatggatgagagccttaggtgttttatgtgatgtgaaaataccgcttaagtt-gaaggaaatttttatcga 3097015  T
Q  353 acaatggtaaaaccagtgatgttgttcctgacaaagtgttgggtgatgaagaaccaacacgaac 416  Q
    |||| ||||| |||   |||||||| |  |||||| ||||||  | | || |||||||||||||    
T  3097016 acaacggtaagaccgacgatgttgtacgggacaaaatgttggacggtaaataaccaacacgaac 3097079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 505
Target Start/End: Original strand, 41886598 - 41886661
Alignment:
Q  442 attcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgtt 505  Q
    |||||||||||| |||| |||| |||| || |||||||||||||||| ||||||||||||||||    
T  41886598 attcccacaaatgggttgcgagtttttgccaaaaagattacaactttaacctctctcatttgtt 41886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 28977492 - 28977442
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  28977492 aggtgaaagttggagatcatatcataccccaagtcacacggtttaaatatc 28977442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 455 - 505
Target Start/End: Original strand, 41900498 - 41900548
Alignment:
Q  455 ggttacgagctttttcccaaaagattacaactttgacctctctcatttgtt 505  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  41900498 ggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 43558449 - 43558399
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  43558449 aggtgaaagttggagatcatagcataccacaagttacacgatttaaatatc 43558399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 411
Target Start/End: Original strand, 21915515 - 21915785
Alignment:
Q  149 gaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttacacggtttaaata-------tcacgagtgcaaaatgacgaggaact 241  Q
    ||||| |||||| || | |||||||||||  |||| ||||||||  |||||||||||||||||||||       |||  ||| |||||| |||| ||| |    
T  21915515 gaagcatttctagtgcagaggtgaaagttcgagattatatcataatacaagttacacggtttaaatatattggttcaatagtacaaaataacgaagaaat 21915614  T
Q  242 agaaggagatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtg-tttatgtgttgcgaaagtaccgcttaagttagagggg 340  Q
    ||||||| |   ||||||| |  |||||| ||||| ||||||||||| ||||||||||| || |||||| | ||| ||||||   | ||||||  ||       
T  21915615 agaaggaaaattaaaccattgagtccaagttgggtagttgaaatggaggagtgcctcagatgttttatgcgatgcaaaagtaagacataagttgaagcaa 21915714  T
Q  341 aaattttatcggacaatggtaaaaccagtgatgttgttcctgacaaagtgttgggtgatgaagaaccaaca 411  Q
    |  ||||||| ||||  ||||| ||||  || ||||| | ||||||||| |||||||||||||||||||||    
T  21915715 attttttatcagacaccggtaagaccaccgacgttgtacgtgacaaagtattgggtgatgaagaaccaaca 21915785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 421
Target Start/End: Original strand, 21952119 - 21952260
Alignment:
Q  282 aaatggatgagtgcctcaggtgttt-atgtgttgcgaaagtaccgcttaagttagaggggaa--attttatcggacaatggtaaaaccagtgatgttgtt 378  Q
    ||||||| |||||||||| |||||| ||||| ||||||||||||||| ||||| || | |||   |||||||||| | ||||||||   | |||| |||     
T  21952119 aaatggaggagtgcctcatgtgttttatgtgatgcgaaagtaccgctcaagtt-gaagtgaatttttttatcggaaagtggtaaaatgggcgatgctgta 21952217  T
Q  379 cctgacaaagtgttgggtgatgaagaaccaacacgaacttaaa 421  Q
    |  |||||||||||||| | | |||||||||||||||||||||    
T  21952218 cgggacaaagtgttgggcgcttaagaaccaacacgaacttaaa 21952260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 24178173 - 24178217
Alignment:
Q  169 gtgaaagttgaagatcatatcataccacaagttacacggtttaaa 213  Q
    |||||||||| |||||||||||||||  |||||||||||||||||    
T  24178173 gtgaaagttggagatcatatcataccctaagttacacggtttaaa 24178217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 38579051 - 38578971
Alignment:
Q  248 agatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggtg-tttatgtgttgcgaaagtaccgct 327  Q
    ||||| |||| |||| ||||||| || |||||||||||||| |||||||||| ||| |||||||| | | |||||||||||    
T  38579051 agatgtaaacgatcgaatccaagctgagtggttgaaatggaggagtgcctcatgtgttttatgtgatacaaaagtaccgct 38578971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 507
Target Start/End: Complemental strand, 28532860 - 28532813
Alignment:
Q  460 cgagctttttcccaaaagattacaactttgacctctctcatttgttcc 507  Q
    ||||||||||| ||||| |||||||||||||||||| ||| |||||||    
T  28532860 cgagctttttcacaaaacattacaactttgacctctttcacttgttcc 28532813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 1525434 - 1525549
Alignment:
Q  304 tttatgtgttgcgaaagtaccgcttaagttagaggggaaattttatcggacaatggtaaaaccagtgatgttgttcctgacaaagtgttgggtgatgaag 403  Q
    |||||||| ||| |||||||||||||||||  |||| || |||||||| |||| ||||| ||| | ||||||||   ||  | ||||||||| | |||||    
T  1525434 tttatgtgatgcaaaagtaccgcttaagttgaagggaaatttttatcgaacaacggtaagaccggcgatgttgt--atgggacagtgttgggcggtgaag 1525531  T
Q  404 aaccaacacgaacttaaa 421  Q
    |||||||| |||| ||||    
T  1525532 aaccaacatgaacataaa 1525549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 509
Target Start/End: Complemental strand, 32268567 - 32268533
Alignment:
Q  475 aagattacaactttgacctctctcatttgttccaa 509  Q
    ||||||||||||||||||||||||| |||||||||    
T  32268567 aagattacaactttgacctctctcacttgttccaa 32268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 36200429 - 36200478
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||| | || |||||||||||| |||||||||| ||||||||||    
T  36200429 aggtgaaagtgggaggtcatatcatacctcaagttacaccgtttaaatat 36200478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 3096811 - 3096879
Alignment:
Q  149 gaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||| ||||||  ||| |||||||||||  ||||||||||  | ||||||||||| ||||||||||||    
T  3096811 gaagcgtttctatcgtagaggtgaaagttagagatcatatctcagcacaagttacatggtttaaatatc 3096879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 37124217 - 37124265
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaata 215  Q
    |||||||||||| |||||| ||||||| ||||||||||  |||||||||    
T  37124217 aggtgaaagttggagatcaaatcatacaacaagttacattgtttaaata 37124265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 38579130 - 38579086
Alignment:
Q  173 aagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||| ||||||||| ||| |||||||||||| |||||||||||    
T  38579130 aagttggagatcatattatagcacaagttacacagtttaaatatc 38579086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 38849741 - 38849887
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||||  |       ||| ||||||||||  ||| |||||| ||||| || |||    
T  38849741 aggtgaaagttggagatcatatcatacctcaatttacacggtttaaatatcttgggtccacagtacaaaatgacggagaaatagaagcagatgtaagcca 38849840  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    | | || |||| |||||||||||||||||  || |||||||||||||    
T  38849841 ttgtattcaagctgggtggttgaaatggagaagagcctcaggtgttt 38849887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 48221431 - 48221481
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48221431 aggtgaaagttgaagatcatatcataccacaagttacacattttaaatatc 48221481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 51448344 - 51448294
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  51448344 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 51448294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 52138475 - 52138525
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  52138475 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 52138525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 47542346 - 47542200
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatcacg-------agtgcaaaatgacgaggaactagaaggagatgcaaacca 259  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||||||  |        || ||||||||||  ||| |||||| ||||| || |||    
T  47542346 aggtgaaagttggagatcatttcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcca 47542247  T
Q  260 tcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    ||  || |||| |||||||||||||||||  || |||||||||||||    
T  47542246 tcatattcaagctgggtggttgaaatggagaagagcctcaggtgttt 47542200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 32490371 - 32490312
Alignment:
Q  155 tttctaatgtataggtgaaagttgaagatcatatcataccacaagttacacggtttaaat 214  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  32490371 tttctaacttatagatgaaagttgaagatcatatcataccacaagttacacaatttaaat 32490312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 19736813 - 19736863
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  19736813 aggtgaaagttggagatcatatcataccccaagttacatggtttaaatatc 19736863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 19757715 - 19757765
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  19757715 aggtgaaagttggagatcatatcataccccaagttacatggtttaaatatc 19757765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 25191026 - 25191076
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  25191026 aggtgaaagttggagatcatatcatagcccaagttacacggtttaaatatc 25191076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 27917219 - 27917269
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  27917219 aggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatc 27917269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 29817152 - 29817202
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  29817152 aggtgaaagttggagatcatatcataccataagttacacggttcaaatatc 29817202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 516
Target Start/End: Original strand, 51763382 - 51763455
Alignment:
Q  443 ttcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaactttgat 516  Q
    |||| |||||| |||| |||| |||||| |||||||||||||||||||| ||||||| ||||||| || |||||    
T  51763382 ttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcccacattgat 51763455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 507
Target Start/End: Original strand, 13469647 - 13469705
Alignment:
Q  449 caaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttcc 507  Q
    ||||| ||||||||||||| |||||||||| ||||||  |||||||||||| |||||||    
T  13469647 caaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcc 13469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 1470732 - 1470683
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||||| |||||||||||||||| ||||| || |||||||||||    
T  1470732 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 1470683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 332
Target Start/End: Original strand, 805630 - 805722
Alignment:
Q  241 tagaaggagatgcaaaccatcgcatccaagatgggtggttgaaatggatgagtgcctcaggt-gtttatgtgttgcgaaagtaccgcttaagt 332  Q
    ||||||||| || ||| ||| | ||| |||||||||||||||||| || |||||| | ||||  |||||||| || |||||||||||||||||    
T  805630 tagaaggagttgtaaatcatagaatctaagatgggtggttgaaatagaggagtgcattaggtattttatgtgatgtgaaagtaccgcttaagt 805722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 30345178 - 30345227
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||| |||| |||||||||||| |||| |||| |||||||||||    
T  30345178 aggtgaaagtggaagctcatatcataccccaagctacaaggtttaaatat 30345227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 30724438 - 30724385
Alignment:
Q  164 tataggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||| |||| |||||||||||||| | ||||||||| ||||| |||||    
T  30724438 tataggtgaacgttggagatcatatcatactataagttacacagtttagatatc 30724385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 46145800 - 46145849
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||| ||||||| |||| || ||||||||||||||| |||||||||||||    
T  46145800 aggttaaagttggagattatgtcataccacaagttatacggtttaaatat 46145849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 51113188 - 51113252
Alignment:
Q  442 attcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttc 506  Q
    |||||||||||| | || |||||||| ||  |||| ||||||||| |||||||||||| ||||||    
T  51113188 attcccacaaatggattgcgagctttctcggaaaatattacaactctgacctctctcacttgttc 51113252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 5839 - 5889
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5839 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 5889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 10100492 - 10100442
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  10100492 aggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 10100442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 20428271 - 20428125
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat--------cacgagtgcaaaatgacgaggaactagaaggagatgcaaacc 258  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||        ||| ||| ||||| ||||   || |||||| ||||| ||| |    
T  20428271 aggtgaaagttggagatcatatcataccacaagttacgcggtttaaatatattgggtccac-agtacaaaacgacggaaaaatagaagcagatgtaaatc 20428173  T
Q  259 atcgcatccaagatgggtggttgaaatggatgagtgcctcaggtgttt 306  Q
    |||| ||||||| |||||||||||||||||  || ||||| |||||||    
T  20428172 atcgtatccaagctgggtggttgaaatggagaagagcctcgggtgttt 20428125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 507
Target Start/End: Complemental strand, 6417149 - 6417092
Alignment:
Q  450 aaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttcc 507  Q
    |||| ||||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  6417149 aaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 9706426 - 9706473
Alignment:
Q  170 tgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  9706426 tgaaagttggagatcatatcataccccaagttacacggtttaaatatc 9706473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 505
Target Start/End: Complemental strand, 6423969 - 6423907
Alignment:
Q  443 ttcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgtt 505  Q
    ||||||||||| |||| |||||||| |||||||| || ||||||||||||||||||| |||||    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 5631464 - 5631513
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  5631464 aggtgaaagttagagatcatatcataccccaagttacacggtttaaatat 5631513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 8812030 - 8811961
Alignment:
Q  148 cgaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||| |||||||| || |||||||  |||||||||||||||||||||||||||||   ||||||||||    
T  8812030 cgaagcgtttctaatttacaggtgaacattgaagatcatatcataccacaagttacaaaatttaaatatc 8811961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 5258783 - 5258735
Alignment:
Q  169 gtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||| ||||||||||||||| |||||||||| |||||||||||    
T  5258783 gtgaaagttggagatcatatcataccccaagttacacagtttaaatatc 5258735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 510
Target Start/End: Original strand, 8913442 - 8913479
Alignment:
Q  473 aaaagattacaactttgacctctctcatttgttccaac 510  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  8913442 aaaagattacaactttgacctctctcaattgttccaac 8913479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 499
Target Start/End: Complemental strand, 19633164 - 19633108
Alignment:
Q  443 ttcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctca 499  Q
    ||||||||||| |||| |||||||| ||| |||  ||||||||||||||||||||||    
T  19633164 ttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacctctctca 19633108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 3632663 - 3632713
Alignment:
Q  167 aggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||||||| |||||||||||||||  || ||||||| ||||||||||    
T  3632663 aggtgaaagttggagatcatatcataccctaaattacacgatttaaatatc 3632713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 505
Target Start/End: Complemental strand, 6395601 - 6395539
Alignment:
Q  443 ttcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgtt 505  Q
    |||||||| || |||| | |||| | |||||||| |||||||||||||||||||||| |||||    
T  6395601 ttcccacagatgggttgcaagctctctcccaaaatattacaactttgacctctctcagttgtt 6395539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 510
Target Start/End: Complemental strand, 7132363 - 7132302
Alignment:
Q  449 caaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaac 510  Q
    ||||| |||| |||||||| |||||||| |||||||||||| | ||||||  ||||||||||    
T  7132363 caaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaac 7132302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 510
Target Start/End: Complemental strand, 7135286 - 7135225
Alignment:
Q  449 caaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaac 510  Q
    ||||| |||| |||||||| |||||||| |||||||||||| | ||||||  ||||||||||    
T  7135286 caaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaac 7135225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 510
Target Start/End: Complemental strand, 7138209 - 7138148
Alignment:
Q  449 caaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttccaac 510  Q
    ||||| |||| |||||||| |||||||| |||||||||||| | ||||||  ||||||||||    
T  7138209 caaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaac 7138148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 509
Target Start/End: Original strand, 7993558 - 7993607
Alignment:
Q  460 cgagctttttcccaaaagattacaactttgacctctctcatttgttccaa 509  Q
    ||||| ||| ||||||| ||||||| |||||||||||||| |||||||||    
T  7993558 cgagcatttgcccaaaacattacaattttgacctctctcaattgttccaa 7993607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 2689316 - 2689352
Alignment:
Q  180 agatcatatcataccacaagttacacggtttaaatat 216  Q
    |||||||||||||||  ||||||||||||||||||||    
T  2689316 agatcatatcataccctaagttacacggtttaaatat 2689352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 507
Target Start/End: Original strand, 6593923 - 6593987
Alignment:
Q  443 ttcccacaaatcggttacgagctttttcccaaaagattacaactttgacctctctcatttgttcc 507  Q
    ||||| ||||| | || |||| ||| || |||||||||||||||||||||||| ||| |||||||    
T  6593923 ttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 491
Target Start/End: Original strand, 10579090 - 10579138
Alignment:
Q  443 ttcccacaaatcggttacgagctttttcccaaaagattacaactttgac 491  Q
    |||||||| || ||||||||||||| |||||||| || |||||||||||    
T  10579090 ttcccacagatgggttacgagctttctcccaaaacataacaactttgac 10579138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 82372 - 82418
Alignment:
Q  171 gaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||    
T  82372 gaaagttggagattatatcataccacaagttacacggtttaaatatc 82418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 4476 - 4407
Alignment:
Q  148 cgaagcttttctaatgtataggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    |||||| |||||||| || |||||||  |||||||||||||||||||||||||||||   ||||||||||    
T  4476 cgaagcgtttctaatttacaggtgaacattgaagatcatatcataccacaagttacaaaatttaaatatc 4407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 12232 - 12183
Alignment:
Q  168 ggtgaaagttgaagatcatatcataccacaagttacacggtttaaatatc 217  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  12232 ggtgaaagttggagatcatatcataccccaagttacatggtttaaatatc 12183  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 31117 - 31161
Alignment:
Q  169 gtgaaagttgaagatcatatcataccacaagttacacggtttaaa 213  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||    
T  31117 gtgaaagttggagatcatatcataccccaagttacacggtttaaa 31161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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