View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_high_16 (Length: 533)
Name: NF11980_high_16
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_16 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 15 - 523
Target Start/End: Complemental strand, 42791437 - 42790929
Alignment:
| Q |
15 |
aaaaagaacggcgtgtccgtgctagtaatggttcttttgtgactaataatttgaagtgtgaaaaattgggtgtcttttgtcacaggtgtggtttacttgg |
114 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42791437 |
aaaaaaaatggcgtgtccgtgctagtaatggttcctttgtgactgttaatttgaagtgtgaaaaattgggtgtcttttgtcacaggtgtggtttactcgg |
42791338 |
T |
|
| Q |
115 |
acatacggaaaaagtgtgcccgaagctgtttgaattggaatctgatgatggtgttcgaaactgaggtgtctatctcaaccccgcttcacaaaggataggt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42791337 |
acatacggaaaaagtgtgcccgaagctgtttgaattggaatctgattatggtgttcgaaactaaggtgtctatctcaaccccgcttcacaaaggataggt |
42791238 |
T |
|
| Q |
215 |
aatgctgcaactgaccgttggctgcaggactctatccctgccactatgccgcgtcaaaacaacaccgttgatggtgcctctgctgctcgaaacacaacaa |
314 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42791237 |
aatgctgcaactaaccgttggctgcaggaccctatccctgccactatgccgcgtcaaaacaacactgttgatggtgcctctgctgctcgaaacacaacaa |
42791138 |
T |
|
| Q |
315 |
atgtaggtaccgaaactgtgccgaatttcaacgacatgatgcttgttgtccagagccatataacaactatcaaacatgatgttcttgctgcccataacgc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42791137 |
atgtaggtaccgaaactgtgccgaatttcaacgacatgatgcttgttgtccagagccatataacaactatcaaacatgatcttcttgctgcccataacgc |
42791038 |
T |
|
| Q |
415 |
tgccaaagcaaaacaaggtgcatgtgctagcttatcttgtcaaatgcactttctaccttcttcttcaacaggcaactcgtcatccaacctgctgcccaac |
514 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42791037 |
tgccaaagcaaaacaaggtacatgtgctagcttatcttgtcaaatgcactttctaccttcttcttcaacatgcaactcgtcatccaacctgctgcccaac |
42790938 |
T |
|
| Q |
515 |
cgacctttg |
523 |
Q |
| |
|
||||||||| |
|
|
| T |
42790937 |
cgacctttg |
42790929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 8561265 - 8561408
Alignment:
| Q |
19 |
agaacggcgtgtccgtgctagtaatggttcttttgtgactaataatttgaagtgtgaaaaattgggtgtcttttgtcacaggtgtggtttacttggacat |
118 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| |||| |||||| || | ||| ||| ||||||| || | | |||||||||| || || |||||| |
|
|
| T |
8561265 |
agaatggcgtgttcgtgctagtaatggttcttttgttactattaattttaaatatgagaaactgggtgttttctattacaggtgtggcttgctcggacat |
8561364 |
T |
|
| Q |
119 |
acggaaaaagtgtgcccgaagctgtttgaattggaatctgatga |
162 |
Q |
| |
|
||||| || ||||| ||| ||||||||||||| ||| ||||||| |
|
|
| T |
8561365 |
acggacaaggtgtgtccggagctgtttgaattagaagctgatga |
8561408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 16760012 - 16759869
Alignment:
| Q |
25 |
gcgtgtccgtgctagtaatggttcttttgtgactaataatttgaagtgtgaaaaattgggtgtcttttgtcacaggtgtggtttacttggacatacggaa |
124 |
Q |
| |
|
||||||||||||||| |||||| ||||||| || ||| || || | |||||| |||||||| |||||||||||||||||| | || ||||||||||| |
|
|
| T |
16760012 |
gcgtgtccgtgctagcaatggtacttttgtctctgttaactttaaatatgaaaagttgggtgttttttgtcacaggtgtggtgtgctcggacatacggac |
16759913 |
T |
|
| Q |
125 |
aaagtgtgcccgaagctgtttgaattggaatctgatgatggtgt |
168 |
Q |
| |
|
|| ||||| ||| |||||||||| |||||| |||||||||||| |
|
|
| T |
16759912 |
aaggtgtgaccggagctgtttgagttggaagttgatgatggtgt |
16759869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 3157 - 3310
Alignment:
| Q |
15 |
aaaaagaacggcgtgtccgtgctagtaatggttcttttgtgactaataatttgaagtgtgaaaaattgggtgtcttttgtcacaggtgtggtttacttgg |
114 |
Q |
| |
|
|||||||| ||| ||||||||| || ||||| |||||| ||| ||| || || | ||| ||| ||||||| |||||| ||| |||||||||||| || |
|
|
| T |
3157 |
aaaaagaatggcatgtccgtgcaagcaatggagtttttgttactgttaactttaaatatgagaaactgggtgttttttgttacaagtgtggtttactcgg |
3256 |
T |
|
| Q |
115 |
acatacggaaaaagtgtgcccgaagctgtttgaattggaatctgatgatggtgt |
168 |
Q |
| |
|
|||||| || ||||| || ||| ||||||| ||||| ||| ||||||||||||| |
|
|
| T |
3257 |
acataccgacaaagtttgtccggagctgttcgaattagaagctgatgatggtgt |
3310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 26902776 - 26902866
Alignment:
| Q |
15 |
aaaaagaacggcgtgtccgtgctagtaatggttcttttgtgactaataatttgaagtgtgaaaaattgggtgtcttttgtcacaggtgtgg |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| || |||||| || | |||||| | ||||| ||||||||||||||||| |
|
|
| T |
26902776 |
aaaaagagtggcgtgtccgtgctagtaatggtaattttgttacagttaatttcaaatacgaaaaacttggtgtattttgtcacaggtgtgg |
26902866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University