View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_17 (Length: 533)
Name: NF11980_high_17
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 519
Target Start/End: Complemental strand, 35204723 - 35204217
Alignment:
| Q |
13 |
aagaatgaaaaacaaagacgaagagaaattaaatcatagatgcagtagatgaagtggagggaaaacaaggagtaaatatccaattttgtccatagaattg |
112 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204723 |
aagaatgaaaaacaaaaaagaagagaaattaaatcatagatgcagtagatgaagtggagggaaaacaaggagtaaatatccaattttgtccatagaattg |
35204624 |
T |
|
| Q |
113 |
taagaccgtaacaactaaattcatcacattgttaatattctaaaatgggtcgacattgcaaaatattaatcaaattcgtctccacatcttgannnnnnnc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35204623 |
taagaccgtaacaactaaattcatcacattgttaatattttaaaatgggtcgacattgcaaaatattaatcaaattcgtctccacatcttgatttttttc |
35204524 |
T |
|
| Q |
213 |
aaccaaatttctttaaaacttctataagtatcaatggagagacgaatttaattaatattttaccattcacggaacattctaaaattataatcccctaaaa |
312 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35204523 |
aatcaaatttctttaaaacttctataagtatcaatggagagacgaatttaattaatattttgccattcacggaacattctaaaattataatcccctaaaa |
35204424 |
T |
|
| Q |
313 |
aagaaattataatatatagaactaggttaatatacagtcccacattttcaatannnnnnnnnggataattgttaaaagatagagtnnnnnnnnnntgtaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |
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| T |
35204423 |
aagaaattataatatatagaactaggttaatatacagtcccacattttcaatatttttttttggataattgtcaaaagatagagtgaaaaaaaaatgtaa |
35204324 |
T |
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| Q |
413 |
taggagtatgaatattggaagttggaaccaagaaaatatatgagtgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacctgaat |
512 |
Q |
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| T |
35204323 |
taggagtatgaatattggaagttggaaccaagaaaatatatgagtgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacctgaat |
35204224 |
T |
|
| Q |
513 |
tgaatat |
519 |
Q |
| |
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||||||| |
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| T |
35204223 |
tgaatat |
35204217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 408 - 519
Target Start/End: Original strand, 55859306 - 55859409
Alignment:
| Q |
408 |
tgtaataggagtatgaatattggaagttggaaccaagaaaatatatgagtgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacc |
507 |
Q |
| |
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||||| ||||||||||||||| ||| |||||||||||||||||||| | |||| ||| |||||||||| ||||||| ||||||||||||||||| |
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| T |
55859306 |
tgtaagaggagtatgaatatttgaaattggaaccaagaaaatatatcaatgtt----gatgaaacctgtca----cctagcactatggtttctaggcacc |
55859397 |
T |
|
| Q |
508 |
tgaattgaatat |
519 |
Q |
| |
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|||||||||||| |
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| T |
55859398 |
tgaattgaatat |
55859409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 408 - 519
Target Start/End: Complemental strand, 3822721 - 3822618
Alignment:
| Q |
408 |
tgtaataggagtatgaatattggaagttggaaccaagaaaatatatgagtgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacc |
507 |
Q |
| |
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||||| ||||||||||||||| ||| |||||||||||||||||||| | ||||||| |||||||| ||||||||| ||| ||||||||||||| |
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| T |
3822721 |
tgtaagaggagtatgaatattagaaattggaaccaagaaaatatatca----atgttgatgaaacctgt----cacctagcactatagtttctaggcacc |
3822630 |
T |
|
| Q |
508 |
tgaattgaatat |
519 |
Q |
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|||||||||||| |
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| T |
3822629 |
tgaattgaatat |
3822618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 519
Target Start/End: Complemental strand, 29275292 - 29275189
Alignment:
| Q |
408 |
tgtaataggagtatgaatattggaagttggaaccaagaaaatatatgagtgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacc |
507 |
Q |
| |
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||||| |||||| |||||||| ||| |||||||||| |||| |||| | ||||||| |||||||||| ||||||| |||||||||||| |||| |
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| T |
29275292 |
tgtaagaggagtgtgaatatttgaaattggaaccaaaaaaaaatatc----tatgttgatgaaacctgtca----cctagcactatggtttctagtcacc |
29275201 |
T |
|
| Q |
508 |
tgaattgaatat |
519 |
Q |
| |
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|||||||||||| |
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| T |
29275200 |
tgaattgaatat |
29275189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 452
Target Start/End: Original strand, 46267293 - 46267337
Alignment:
| Q |
408 |
tgtaataggagtatgaatattggaagttggaaccaagaaaatata |
452 |
Q |
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||||| ||||||||||||||| ||| ||||||||||||||||||| |
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| T |
46267293 |
tgtaagaggagtatgaatattagaaattggaaccaagaaaatata |
46267337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 46267346 - 46267384
Alignment:
| Q |
481 |
cacctagcattatggtttctaggcacctgaattgaatat |
519 |
Q |
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||||||||| ||||||||||||||||||| ||||||||| |
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| T |
46267346 |
cacctagcactatggtttctaggcacctgcattgaatat |
46267384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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