View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_2 (Length: 733)
Name: NF11980_high_2
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 117 - 464
Target Start/End: Complemental strand, 39583818 - 39583495
Alignment:
| Q |
117 |
tgcgaaacattgcaggctttcaagtatgacaaatagcgtgtttagttcgaataaaaaacgtggtggaaatgatggcaatgaagaagagcgaaggcggaag |
216 |
Q |
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| T |
39583818 |
tgcgaaacattgcaggctttcaagtatgacaaatagcgtgtttagttcgaataaaaaacgtggtggaaatgatggcaatgaagaagagcgaaggcg---- |
39583723 |
T |
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| Q |
217 |
cgaaggcgaatgctccattgtatgcatatgcagatgattatggctgcggctgcggctgcggctgcattgatatgtatctattacctgaaatatttggaag |
316 |
Q |
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| T |
39583722 |
--------aatgctccattgtatgcatatgcagatgattatggctgcggctgc------------attgatatgtatctattacctgaaatatttggaag |
39583643 |
T |
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| Q |
317 |
aaagtgacaggtaaagtgaagacacagacacagatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcctga |
416 |
Q |
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| T |
39583642 |
aaagtgacagtgaaagtgaagacacagacacagatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcctga |
39583543 |
T |
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| Q |
417 |
tcaatagaaaaggaaacaactgcggcgtgttttacttcttttctgcta |
464 |
Q |
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| T |
39583542 |
tcaatagaaaaggaaacaactgcggcgtgttttacttcttttctgcta |
39583495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 532 - 733
Target Start/End: Complemental strand, 39583427 - 39583226
Alignment:
| Q |
532 |
atgaacttctgaagtctcaatataagcatttctgatctctagtttttctttccctttcaaaatattggttttcacagcatttaccataaatgcttatatg |
631 |
Q |
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| T |
39583427 |
atgaacttctgaagtctcagtataagcatttctgatctctagtttttctttccctttcaaaatattggttttcgcagcatttaccataaatgcttatatg |
39583328 |
T |
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| Q |
632 |
gcaagtgttgacctgagnnnnnnntggtgtgacattctcatctcttgtgcaagccagcaatgataacatgtgcttttgaattggagacagagagaaggac |
731 |
Q |
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| T |
39583327 |
gcaagtgttgacctgagaaaaaaatggtgtgacattctcatctcttgtgccagccagcaatgataacatgtgcttttgcattggaggcagagagaaggac |
39583228 |
T |
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| Q |
732 |
ta |
733 |
Q |
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| T |
39583227 |
ta |
39583226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 39583881 - 39583817
Alignment:
| Q |
21 |
gtagtgtttgtgattattggttcttgtatctgtgtggataaaatatattcaagaactgtcgtatg |
85 |
Q |
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| T |
39583881 |
gtagtgtttgtgattattggttcttgtatctgtgtggataaaatatattcaagaactgtcgtatg |
39583817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 313 - 439
Target Start/End: Original strand, 39627296 - 39627425
Alignment:
| Q |
313 |
gaagaaagtgacaggtaaagtgaagacacagacacagatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttc |
412 |
Q |
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| T |
39627296 |
gaagaaagtgatagtgaaagtgaagacacggacactgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttc |
39627395 |
T |
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| Q |
413 |
---ctgatcaatagaaaaggaaacaactgc |
439 |
Q |
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| T |
39627396 |
ttgatgatcaatagaaaaggaaacagctgc |
39627425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 349 - 439
Target Start/End: Original strand, 39616604 - 39616697
Alignment:
| Q |
349 |
gatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcc---tgatcaatagaaaaggaaacaactgc |
439 |
Q |
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| T |
39616604 |
gatagtgatacagatactgatattgatacggaaactgaaagtactggaaggacaaatgaagttcctgatgatcaatagaaaaggaaacagctgc |
39616697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 39627119 - 39627218
Alignment:
| Q |
127 |
tgcaggctttcaagtatgacaaatagcgtgtttagttcgaataaaaaacgtggtggaa---atgatggcaatgaagaagagcgaaggcggaagcgaaggc |
223 |
Q |
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| T |
39627119 |
tgcagactttcaagtatgacaactagcttgtttagttcaaataataaacgtggtagaaatgatgatgatgatgaagaagagcgaaagcagaagcaaaggc |
39627218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 356
Target Start/End: Original strand, 47532640 - 47532851
Alignment:
| Q |
127 |
tgcaggctttcaagtatgacaaatagcgtgtttagttcgaataaaaaacgtggtggaaatgatggcaatgaagaagagcgaaggcggaagcgaaggcgaa |
226 |
Q |
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|||||| ||||||| ||||| |||| ||||||| || ||||||||||| ||| ||||||||| | |||||| ||||||||||||||| |||||||| |
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| T |
47532640 |
tgcaggatttcaagcatgacccctagcttgtttagctcaaataaaaaacgaggtagaaatgatgacgatgaag---agcgaaggcggaagcaaaggcgaa |
47532736 |
T |
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| Q |
227 |
tgctccattgtatgcatatgcagatgattatggctgcggctgcggctgcggctgcattgatatgtatctattacctgaaatatttggaagaaagtgacag |
326 |
Q |
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| T |
47532737 |
tgctc---tgtatgaat------atgattat------ggctgcagctgcagctgccttgatatgcatctatgacctgtaccttttggaagaaagtgacag |
47532821 |
T |
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| Q |
327 |
gtaaagtgaagacacagacacagatagtga |
356 |
Q |
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| T |
47532822 |
tgaaagtgaagccacagatactgatagtga |
47532851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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