View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_high_22 (Length: 512)

Name: NF11980_high_22
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_high_22
NF11980_high_22
[»] chr8 (1 HSPs)
chr8 (13-495)||(18165034-18165515)
[»] chr2 (3 HSPs)
chr2 (306-376)||(3208296-3208366)
chr2 (195-247)||(6385205-6385257)
chr2 (386-426)||(25635667-25635707)
[»] chr4 (1 HSPs)
chr4 (309-378)||(3520919-3520988)
[»] chr6 (2 HSPs)
chr6 (309-376)||(27858141-27858208)
chr6 (389-443)||(6215394-6215448)
[»] chr7 (1 HSPs)
chr7 (343-429)||(32156364-32156450)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 13 - 495
Target Start/End: Complemental strand, 18165515 - 18165034
Alignment:
Q  13 agatgaacatataatagactttatggagacagataatcttagtcatgttaggagtgaccaaatttctttaggagcaagtaaccatcaaatcgaaagnnnn 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  18165515 agatgaacatataatagactttatggagacagataatcttagccatgttaggagtgaccaaatttctttaggagcaagtaaccatcaaatcgaaagaaaa 18165416  T
Q  113 nnnccgatttttgttgataagagagttaccattcactatgtaggccaagacagaaccaccttacaaggacaacatgggaagttgataattttacctgatt 212  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18165415 aaaccgatttttgttgataagagagttaccattcactatgtaggccaagacagaaccaccttacaaggacaacatgggaagttgataattttacctgatt 18165316  T
Q  213 cattggaagagctgctcaagattgtaggtaagcatctaattaaacattctgtcaaatactttttggtaaataatgtcggtataggtaga-gtttcatgca 311  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||  |||  ||||||||||    
T  18165315 cattggaagagctgctcaagattgttggtaagtatctaattaaacattctgtcaaatactctttggtaaataatgtcggtata--taggtgtttcatgca 18165218  T
Q  312 tgtttgaattggcattgagattgacaaaatcacggtgagctacctcgattttgacaaaagctacaatttgatggttcaacaaaatcacaatggcaccgta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18165217 tgtttgaattggcattgagattgacaaaatcacggtgagctacctcgattttgacaaaagctaaaatttgatggttcaacaaaatcacaatggcaccgta 18165118  T
Q  412 attttgccaaactcactataaatttgaacatatacttacagaacgttttccacggtcaactaattatatcttttagcatgatgt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18165117 attttgccaaactcactataaatttgaacatatacttacagaacgttttccacggtcaactaattatatcttttagcatgatgt 18165034  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 3208366 - 3208296
Alignment:
Q  306 catgcatgtttgaattggcattgagattgacaaaatcacggtgagctacctcgattttgacaaaagctaca 376  Q
    ||||||||||||| || ||  || ||||| || ||||||||||||| |||| |||||||||||||||||||    
T  3208366 catgcatgtttgattttgcggtgggattgtcagaatcacggtgagccaccttgattttgacaaaagctaca 3208296  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 6385257 - 6385205
Alignment:
Q  195 tgataattttacctgattcattggaagagctgctcaagattgtaggtaagcat 247  Q
    |||||||  ||||||||||||| |||||||||||||| ||||  |||||||||    
T  6385257 tgataatcctacctgattcattagaagagctgctcaaaattgctggtaagcat 6385205  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 25635667 - 25635707
Alignment:
Q  386 ttcaacaaaatcacaatggcaccgtaattttgccaaactca 426  Q
    ||||||| |||||||||| |||||| |||||||||||||||    
T  25635667 ttcaacagaatcacaatgtcaccgtgattttgccaaactca 25635707  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 3520919 - 3520988
Alignment:
Q  309 gcatgtttgaattggcattgagattgacaaaatcacggtgagctacctcgattttgacaaaagctacaat 378  Q
    ||||||||| ||||||  | ||||||   |||||||| ||| ||||||||||||||||||||||||||||    
T  3520919 gcatgtttgtattggcggtaagattggttaaatcacgatgaactacctcgattttgacaaaagctacaat 3520988  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 27858141 - 27858208
Alignment:
Q  309 gcatgtttgaattggcattgagattgacaaaatcacggtgagctacctcgattttgacaaaagctaca 376  Q
    ||||||||| |||| || ||||||| ||| ||||||| ||| | ||| ||||||||||||||||||||    
T  27858141 gcatgtttggattgacagtgagattaacagaatcacgatgatccaccacgattttgacaaaagctaca 27858208  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 6215394 - 6215448
Alignment:
Q  389 aacaaaatcacaatggcaccgtaattttgccaaactcactataaatttgaacata 443  Q
    |||||||||||| || ||||||||||| || ||||||||||| |||| |||||||    
T  6215394 aacaaaatcacagtgtcaccgtaatttggctaaactcactatcaattcgaacata 6215448  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 429
Target Start/End: Complemental strand, 32156450 - 32156364
Alignment:
Q  343 acggtgagctacctcgattttgacaaaagctacaatttgatggttcaacaaaatcacaatggcaccgtaattttgccaaactcacta 429  Q
    ||||||||||||| | |||||||||||| ||| | ||||    |||||||||||||||||| ||  || |||||||| |||||||||    
T  32156450 acggtgagctaccacaattttgacaaaaactatattttggatattcaacaaaatcacaatgccaatgtgattttgcctaactcacta 32156364  T

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