View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_26 (Length: 475)
Name: NF11980_high_26
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 44857295 - 44857418
Alignment:
| Q |
12 |
gaatacttgctgttactgttgctgttgttggaatgatcaaagggaaggataaagattttgtcacgagaatgtggtctgcatttgttgcatgaaacagaac |
111 |
Q |
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| T |
44857295 |
gaatacttgctgttactgttgctgttgttggaatgatcaaagggaaggataaagattttgtcacgagaatgtggtctgcatttgttgcatgaaacagaac |
44857394 |
T |
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| Q |
112 |
catcttctagttcagtttcagaac |
135 |
Q |
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| T |
44857395 |
catcttctagttcagtttcagaac |
44857418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 346 - 461
Target Start/End: Original strand, 44857613 - 44857728
Alignment:
| Q |
346 |
gagtaatagtactagctagaaagtatgaaaatgttactaaactggtgtgaattgtggagaatggcgtgaagggattaaaggaggagatttggaagaagag |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44857613 |
gagtaatagtactagctagaaagtatgaaaatgttactaaactggtgtgaattgtggagaatggcgtgaagggattaaaggaggagatttggaagaagag |
44857712 |
T |
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| Q |
446 |
gaagaagtcatttttg |
461 |
Q |
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| T |
44857713 |
gaagaagtcatttttg |
44857728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 44857498 - 44857593
Alignment:
| Q |
218 |
agcacttgttggtgttgttcttctactttggcttctgtattcatcaaattcatgttcttcttgaatctgcatatttaatttgattaatataacata |
313 |
Q |
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| T |
44857498 |
agcacttgttggtgttgttcttctactttggcttctgtattcatcaaattcatgttcctcttgaatctgcatatttaatttgattaatataacata |
44857593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 37221729 - 37221787
Alignment:
| Q |
12 |
gaatacttgctgttactgttgctgttgttggaatgatcaaagggaaggataaagatttt |
70 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221729 |
gaatacttgctgttactgttgctgttgttggaatgatcaaagggaaggataaagatttt |
37221787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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