View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_29 (Length: 439)
Name: NF11980_high_29
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 59 - 432
Target Start/End: Original strand, 24188549 - 24188923
Alignment:
| Q |
59 |
caacacgcacttagtcaaacccacaacgtctacctaccccaaaatcataaggtatccaatatccatcatcttatcttctatagtttatttattatttttg |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24188549 |
caacacgcacttagtcaaacccacaacgtctacctaccccaaaatcataaggtatccaatatccatcatcttatcttctataatttatttattatttttg |
24188648 |
T |
|
| Q |
159 |
aaagcatggtt-atttattacgtatcttctaagtttagctaaatcaagaaacccaaaatttcaatgtccacaaataaacccaaacctgttcttccttgta |
257 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24188649 |
aaagcatggtttatttattacgtatcttctaagtttagctaaatcaagaaacccaaaatttcaatgtccacaaataaacccaaacctgttcttccttgga |
24188748 |
T |
|
| Q |
258 |
aggtccgcgctacaatttcacttcttacaattttaacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctctttaacttcttcgatctcaa |
357 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
24188749 |
aggtccgcgctacaatttcacttcttacagttttaacggactcttcatgtcgcgcaaacggcaccgtcaatcgccgtctctttaacttcttcgatctcaa |
24188848 |
T |
|
| Q |
358 |
atcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgttaactccgaaaacaacctttg |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
24188849 |
atcctcacctaacgccactccgattaacggcgtttccactaaagacgtcaccgttaactccgaaaacaacctttg |
24188923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 123 - 432
Target Start/End: Original strand, 24178803 - 24179117
Alignment:
| Q |
123 |
atcatcttatcttctatagtttatttattatt-tttgaaagcatggtt-atttattac---gtatcttctaagtttagctaaatcaagaaacccaaaatt |
217 |
Q |
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|||||| |||||||||| | |||||||||||| |||||||| |||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||| |
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| T |
24178803 |
atcatcctatcttctatggcttatttattattctttgaaaggatggtttatttattactatgtatcttctaattttagctaaatcaaaaaacccaaaatt |
24178902 |
T |
|
| Q |
218 |
tcaatgtccacaaataaacccaaacctgttcttccttgtaaggtccgcgctacaatttcacttcttacaattttaacggacgcttcatgtcgagctaacg |
317 |
Q |
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|||||||| | ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24178903 |
tcaatgtctaaaaaccaacccaaacctcttcttccttggaaggtccgcgctacaatttcacttcttacagttttaacggacgcttcatgtcgagctaacg |
24179002 |
T |
|
| Q |
318 |
gtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgttaactc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |
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| T |
24179003 |
gtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactcctgttaacggcgtttccaccaaagacgttaccgttaacgc |
24179102 |
T |
|
| Q |
418 |
cgaaaacaacctttg |
432 |
Q |
| |
|
|||||| ||| |||| |
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|
| T |
24179103 |
cgaaaataacgtttg |
24179117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 227 - 432
Target Start/End: Original strand, 24168476 - 24168681
Alignment:
| Q |
227 |
acaaataaacccaaacctgttcttccttgtaaggtccgcgctacaatttcacttcttacaattttaacggacgcttcatgtcgagctaacggtaccgtca |
326 |
Q |
| |
|
||||| |||||||||||| ||||| |||| ||| |||||||| |||||||||||| || ||||||| ||||||| ||||| ||||||| || ||| |
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| T |
24168476 |
acaaacaaacccaaacctcttctttcttggaagcctcgcgctaccatttcacttctttcatttttaaccgacgcttgttgtcgctctaacggcacattca |
24168575 |
T |
|
| Q |
327 |
accgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgttaactccgaaaacaa |
426 |
Q |
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||||||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||| ||||||| |||||| ||||||||||||||||||| || |
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| T |
24168576 |
accgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggtgtttccatcaaagacattaccgttaactccgaaaataa |
24168675 |
T |
|
| Q |
427 |
cctttg |
432 |
Q |
| |
|
| |||| |
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|
| T |
24168676 |
cgtttg |
24168681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 432
Target Start/End: Original strand, 24151676 - 24151842
Alignment:
| Q |
266 |
gctacaatttcacttcttacaattttaacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcac |
365 |
Q |
| |
|
||||| |||||||||||| || ||||| |||||||| | ||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
24151676 |
gctaccatttcacttctttcacttttattcgacgcttcttctcgctctaacggcaccgtcaaccgccgtctctttaacttcttcagtctcaatgcctcac |
24151775 |
T |
|
| Q |
366 |
ctaacgccactccgattaacggcgtttccacaaaagacgttaccgttaactccgaaaacaacctttg |
432 |
Q |
| |
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||||| ||||||| |||||||||||||||| |||||| ||||||||||| ||||||| ||| |||| |
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| T |
24151776 |
ctaactccactcccgttaacggcgtttccaccaaagacattaccgttaacaccgaaaataacgtttg |
24151842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 24112443 - 24112546
Alignment:
| Q |
312 |
ctaacggtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgt |
411 |
Q |
| |
|
||||||| ||||| ||||||||| | |||| ||||| |||| |||||| || |||||||||| || |||||||||||||||| |||||||||| ||| |
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| T |
24112443 |
ctaacggcaccgttaaccgccgttttcttaatttcttagatcgcaaatcttcccctaacgccatccctgttaacggcgtttccaccaaagacgttatcgt |
24112542 |
T |
|
| Q |
412 |
taac |
415 |
Q |
| |
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|||| |
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|
| T |
24112543 |
taac |
24112546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 403
Target Start/End: Original strand, 24107298 - 24107412
Alignment:
| Q |
289 |
tttaacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggc |
388 |
Q |
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||||||||||||| |||||||| |||| |||| || ||||||||||| | ||||| || ||| |||| | || |||| || ||||| |||||||| |
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| T |
24107298 |
tttaacggacgctgcatgtcgatctaatggtagtgttaaccgccgtcttctcaactttttagataacaaaacatcggctaaagcaactcccattaacggt |
24107397 |
T |
|
| Q |
389 |
gtttccacaaaagac |
403 |
Q |
| |
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||||||||||||||| |
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| T |
24107398 |
gtttccacaaaagac |
24107412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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