View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_3 (Length: 713)
Name: NF11980_high_3
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 4 - 598
Target Start/End: Complemental strand, 49083439 - 49082847
Alignment:
| Q |
4 |
aaacattaattgtcaataactaacaaaataagggcnnnnnnnttgaacaaaaatacaagataaaagaaagttatatacctccagtttcgtccttatactc |
103 |
Q |
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| T |
49083439 |
aaacgttaattgtcaataactaacaaaataagggcaaaaaaattgaacaaaaatacaagataaaagaaagttatatacctccagttacgtccttatactc |
49083340 |
T |
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| Q |
104 |
agccgactccctttcatatttgatagaattatcctgcatattttccatgtatttactatcagcttcagaaaatggtgatgtagaagtgaagatactttgc |
203 |
Q |
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| T |
49083339 |
agccgactccctttcatatttgatagaattatcctgcatattttccatgtatttactatcagcttcagaaaatggtgatgtagaagtgaagatactttgc |
49083240 |
T |
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| Q |
204 |
acaaaagagttgccagtttctatgttnnnnnnnggaaattttcctcaagtttgcaggagagtgagtggctttgtatatgttaccgaagccagacattgaa |
303 |
Q |
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| T |
49083239 |
acaa--gagttgccagtttctatgttaaaaaaaggaaattttcctcaagtttgcaggagagtgagtggctttgtatatgttaccgaagccagacattgaa |
49083142 |
T |
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| Q |
304 |
agtgtaaatagaacattaataatgaaatccgctgaggtaaaagttagctgttgtttcacaactaacagtctgaaactgacatatctaacaatcctattac |
403 |
Q |
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| T |
49083141 |
agtgtaaatagaatattaataatgaaatccgctgaggtaaaagttaactgttgtttcacaactaacagtctgaaactgacatatctaacaatcctattac |
49083042 |
T |
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| Q |
404 |
actgcttcagtgaaatttagatggcgtgcataggcaaaacttacatgaggctcactannnnnnncactgcattcaatatttttgtgtgtggaagccacgg |
503 |
Q |
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| T |
49083041 |
actgcttcagtgaaatttagatggcgtgcataggcaaaacttacatgaggctcactatttttttcactgcattcaatatttttgtgtgtggaagccacag |
49082942 |
T |
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| Q |
504 |
aaccactagaatgattgcttgcagcattgttttctgcagcaacatcaagtttattctgtggaaatgttatgttttgaggaggcatgataatctgt |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
49082941 |
aaccactagaatgattgcttgcagcattgttttctgcagcaacatcaagtttattctgtggaaatgttatattttgaggaggcatggtaatctgt |
49082847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 713
Target Start/End: Complemental strand, 49082787 - 49082750
Alignment:
| Q |
676 |
attgacatacagtagtctttcttctccacacatgctgc |
713 |
Q |
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| T |
49082787 |
attgacatacagtagtatttcttctccacacatgctgc |
49082750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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