View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_33 (Length: 434)
Name: NF11980_high_33
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 8330810 - 8330383
Alignment:
| Q |
1 |
aggcaatgagatggacatcacatcccctgatgctgttcacaaagttagacaaaagatcatagagcatatggatttatggttgtctcagtgtcaggacaca |
100 |
Q |
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||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330810 |
aggcaatgagaagaactgcacatcccctgatgctgttcacaaagttagacaaaagatcatagagcatatggatttatggttgtctcagtgtcaggacacg |
8330711 |
T |
|
| Q |
101 |
ggcaggacttgtatataagatttgtatgagttgcatgatgttacaactagaagttactctggtttctagtattaatacttaattatatgttgtgctttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330710 |
ggcaggacttgtatataagatttgtatgagttgcatgatgt-acaactagaagttactctggtttctagtattaatacttaattatatgttgtgctttga |
8330612 |
T |
|
| Q |
201 |
ataatcttgtgtaagttgatcaaatgcaaggcaaaacatatttgtacaaagttattttatatcgttcaatctcaagataatagtgtaccagttatatatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330611 |
ataatcttgtgtaagttgatcaaatgcaaggcaaaacatatttgtacaaagttattttatatcgttcaatctcaagataatagtgtaccagttatatatt |
8330512 |
T |
|
| Q |
301 |
tataacatttgggtgtcattggcctatagtgaaaatctacaaagaaaatggatgtctacttagtagtgactttggtcatttttcattggccactgatgca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8330511 |
tataacatttgggtgtcattggcctatagtgaaaatctacaaagaaaatggatgtctacttagtagtgactttggtcatttttcattggtcactgatgca |
8330412 |
T |
|
| Q |
401 |
tagagtcattagtccctgtctctgcttct |
429 |
Q |
| |
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|||| ||||||||||||||||||| |||| |
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|
| T |
8330411 |
tagaatcattagtccctgtctctgtttct |
8330383 |
T |
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