View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_high_34 (Length: 429)

Name: NF11980_high_34
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_high_34
NF11980_high_34
[»] chr1 (3 HSPs)
chr1 (85-283)||(25495351-25495549)
chr1 (327-423)||(25495659-25495755)
chr1 (18-59)||(25495284-25495325)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 85 - 283
Target Start/End: Original strand, 25495351 - 25495549
Alignment:
Q  85 gggttctaatatgaattttgtaatctagtctattcagttagaccaaacactagttggtatttttaaaagttctttttctttctttgtttggtttgaggga 184  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25495351 gggttctaatatgaattt-gtaatctagtctattcagttagaccaaacactagttggtatttttaaaagttctttttctttctttgtttggtttgaggga 25495449  T
Q  185 ctaattttgtaagttattaatatgacaaaaacctaagacttttatttttt-gaaagagaaacaaaatttgtataatcattttaagttagctctatctcat 283  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25495450 ctaattttgtaagttattaatatgacaaaaacttaaaacttttattttttggaaagagaaacgaaatttgtataatcattttaagttagctctatctcat 25495549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 327 - 423
Target Start/End: Original strand, 25495659 - 25495755
Alignment:
Q  327 aggattattttagaatatcattctttgtatgatgttccatcaattgtacaacgcagctctctctaaaaaaggggtcaagtaccaaattctctgcttc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  25495659 aggattattttagaatatcattctttgtatgatgttccatcaattgtacaacgcaactctctctaaaaaaggggtcaagtaccaaattctttgcttc 25495755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 25495284 - 25495325
Alignment:
Q  18 accatattatcggactttgtctttcactgttaatgttggaag 59  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25495284 accatattatcggactttgtctttcactgttaatgttggaag 25495325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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