View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_35 (Length: 426)
Name: NF11980_high_35
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Original strand, 41545049 - 41545450
Alignment:
| Q |
10 |
atgatatgaaaaataatgactctctagttctagattgtgacattttttgggtttcaaatttcaaaccagccaccataatccatcttatcatatacttcac |
109 |
Q |
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| T |
41545049 |
atgatatgaaaaataatgactctctagttctagattgtgacattttttgggtttaaaatttcaaaccagccaccataatccatcttatcatatacttcac |
41545148 |
T |
|
| Q |
110 |
aaattggatttaagaaccaacagtatacaagaagaaagactaaacgtacagagaattcatgaaaagcattgcaatatacgtttgctagatccatttggca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41545149 |
aaattggatttaagaaccaacagtatacaagaagaaagactaaacgtacagagaattcatgaaaagcattgcaatatacgtttgctagatccatttggca |
41545248 |
T |
|
| Q |
210 |
tcacaataattggttgtgttcaaatctggcacatggagcataacttaaactagctacttcgagtgtgtatgcattttcagcacagtgctatgtgtccact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41545249 |
tcacaataattggttgtgttcaaatctggcacatggagcataacttaaactagctacttcgagtgtgtatgcattttcagcacagtgctatgtgtccact |
41545348 |
T |
|
| Q |
310 |
cacactaccttttatccacattgccttgaagtaactcctaagacacaatcaatgaattaccaaaagtggaagaaaaaactacacaacaattcgtgttctt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41545349 |
cacactaccttttatccacattgccttgaagtaactcctaagacacactcaatgaattaccaaaagtggaaaaaaaaactacacaacaattcgtgttctt |
41545448 |
T |
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| Q |
410 |
tt |
411 |
Q |
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|| |
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| T |
41545449 |
tt |
41545450 |
T |
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