View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_38 (Length: 399)
Name: NF11980_high_38
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 9026531 - 9026126
Alignment:
| Q |
1 |
ctcatgcaaagtcgttaaccagcttcataccacaaaaataccacatatatgtcacatcaacgtagattttgacactcttgtcacgaaaaatgtaatgtcc |
100 |
Q |
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| T |
9026531 |
ctcatgcaaagtcgttaaccagcttcataccacaaaaataccacatatatgtcacgtcaacgtagtttttgacactcttgtcacgaaaaatgtaatgtcc |
9026432 |
T |
|
| Q |
101 |
accaattactataaataaattcggatagcctaatcatggatcaacttcatcttc--------------catctcaactgcaacagttgcatccatacaac |
186 |
Q |
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| T |
9026431 |
accaattactataaataaattcggatagcctaatcatggatcaacttcatcttctcttcatcatcttccatctcagttacaacagttgcatccatacagc |
9026332 |
T |
|
| Q |
187 |
tcccaaattctgtaattaggtagctaaaatgtgcatgtgccccattcatgcactcgacctcaatgtcagtctcctcttgatcaacaactatcaattagac |
286 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
9026331 |
tcccaaattctgtaatcaggtagctgaaatgtgcatgtgccccattcatgcactccacctcaatgtcagtctcctctagatcagcaactatcaattagac |
9026232 |
T |
|
| Q |
287 |
cattcatttggtctaccacgtcacgtctggcctgaggaccatcatggtctagaaaacgattcgcaatggacaactgcagcagacatgacaaatcatcaag |
386 |
Q |
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||| |||||||||||||||| ||| | |||||| | |||||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| |
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| T |
9026231 |
catgcatttggtctaccacgccacttttggcctcaagaccatcatggtctaggaaacgactcgcaatggacaaatgcagcagacatgacacatcatcaag |
9026132 |
T |
|
| Q |
387 |
tgtcac |
392 |
Q |
| |
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|||||| |
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| T |
9026131 |
tgtcac |
9026126 |
T |
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