View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_40 (Length: 395)
Name: NF11980_high_40
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_40 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 24421945 - 24421551
Alignment:
| Q |
1 |
aaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcattttagaaattaagaaatcttataat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24421945 |
aaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttgagaaattaagaaatcttataat |
24421846 |
T |
|
| Q |
101 |
tcaagcttcggcaacactatataaagagttggaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagtacagaaatacaca |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24421845 |
tcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaaggaactgagtacagaaatacaca |
24421746 |
T |
|
| Q |
201 |
ttcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatctacgcaatagcattttgcgtaattgcaagcagtgtcgctgctgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24421745 |
ttcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatctacgcaatagcattttgcgtaattgcaagcagtgtcgctgctgatg |
24421646 |
T |
|
| Q |
301 |
attataagccttactatggcggccaaccaaacaacaactatccgcaaccaacaccaccaagtcatggacagcagccaccttactatttcaaatca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| |
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| T |
24421645 |
attataagccttactatggcggccaaccaaacaacaactatccgcaaccaacaccaccaagtcatggacaacagccaccatattatttcaaatca |
24421551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 24469778 - 24470172
Alignment:
| Q |
1 |
aaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcattttagaaattaagaaatcttataat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24469778 |
aaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttgagaaattaagaaatcttataat |
24469877 |
T |
|
| Q |
101 |
tcaagcttcggcaacactatataaagagttggaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagtacagaaatacaca |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24469878 |
tcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaaggaactgagtacagaaatacaca |
24469977 |
T |
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| Q |
201 |
ttcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatctacgcaatagcattttgcgtaattgcaagcagtgtcgctgctgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24469978 |
ttcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatctacgcaatagcattttgcgtaattgcaagcagtgtcgctgctgatg |
24470077 |
T |
|
| Q |
301 |
attataagccttactatggcggccaaccaaacaacaactatccgcaaccaacaccaccaagtcatggacagcagccaccttactatttcaaatca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| |
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| T |
24470078 |
attataagccttactatggcggccaaccaaacaacaactatccgcaaccaacaccaccaagtcatggacaacagccaccatattatttcaaatca |
24470172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 24478112 - 24477878
Alignment:
| Q |
21 |
catccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcattttagaaattaagaaatcttataattcaagcttcggcaacactat |
120 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || | ||||||| |||||||||||| | |||| | |||||||| |
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| T |
24478112 |
catccacgaaataaaaatataattcaaaactttaagccaggctgtcttaatgcaattgaaaaattaa-aaatcttataatctatgcttggaaaacactat |
24478014 |
T |
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| Q |
121 |
ataaagagttggaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagtacagaaatacacattcttaaaaaagatgggaac |
220 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24478013 |
ataaagagttagaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagtacagaaatacacattcttaaaaaagatgggaac |
24477914 |
T |
|
| Q |
221 |
ctcatttgggttgaggcatttgcctcaactcatcta |
256 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24477913 |
ctcatttgggttgaggcatttgcctcaactcatcta |
24477878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 392
Target Start/End: Complemental strand, 24406780 - 24406666
Alignment:
| Q |
270 |
tgcgtaattgcaagcagtgtcgctgctgatgattataagccttactatggcggccaaccaaacaacaactatccgcaaccaacaccaccaagtcatggac |
369 |
Q |
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|||||||||||||| | ||| | |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| | |
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| T |
24406780 |
tgcgtaattgcaagtattgttgttgctgatgattataagccttactatg--------ccaaacaacaactatccacaactaacaccaccaagtcatggcc |
24406689 |
T |
|
| Q |
370 |
agcagccaccttactatttcaaa |
392 |
Q |
| |
|
|||||||||| || ||||||||| |
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| T |
24406688 |
agcagccaccatattatttcaaa |
24406666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 4038 - 4416
Alignment:
| Q |
1 |
aaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcattttagaaattaagaaatcttataat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4038 |
aaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttgagaaattaagaaatcttataat |
4137 |
T |
|
| Q |
101 |
tcaagcttcggcaacactatataaagagttggaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagtacagaaatacaca |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4138 |
tcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaaggaactgagtacagaaatacaca |
4237 |
T |
|
| Q |
201 |
ttcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatctacgcaatagcattttgcgtaattgcaagcagtgtcgctgctgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4238 |
ttcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatctacgcaatagcattttgcgtaattgcaagcagtgtcgctgctgatg |
4337 |
T |
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| Q |
301 |
attataagccttactatggcggccaaccaaacaacaactatccgcaaccaacaccaccaagtcatggacagcagccacc |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4338 |
attataagccttactatggcggccaaccaaacaacaactatccgcaaccaacaccaccaagtcatggacaacagccacc |
4416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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