View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_42 (Length: 387)
Name: NF11980_high_42
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 49070838 - 49070566
Alignment:
| Q |
19 |
ctccacaccctctctaaccactagagttcgaccacaaaattcctgcaagaacaagagtcaagagtagtaggcatgagatagaaacaggtgaaataagcag |
118 |
Q |
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| T |
49070838 |
ctccacaccctctctaaccactagagttcgaccacaaaattcctgcaagaacaagagtcaagagtagtaggcatgagatagaaacaggtgaaataagcag |
49070739 |
T |
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| Q |
119 |
cagaaaaagtgaaacgaggtggaggcatattttacggttccattgagggacatagaggcgtcacgttctctttgagagagataagaaacaaaggcataga |
218 |
Q |
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| T |
49070738 |
cagaaaaagtgaaacgaggtggaggcatattttacggttccattgagggacatagaggcgtcacgttctctttgagagagataagagacaaaggcataga |
49070639 |
T |
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| Q |
219 |
cacggctt-ttttccccctgattcaaatcttgcaacaccctcacactagccacatttccaaatttaccaaaga |
290 |
Q |
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| T |
49070638 |
cacggcttttttttcccctgattcaaatcttgcaacaccctcacactagccacatttccaaatttaccaaaga |
49070566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 380
Target Start/End: Complemental strand, 49070569 - 49070514
Alignment:
| Q |
325 |
aagattcccaacatacaccttatgaggaccttcatagtatattgttcttcatctca |
380 |
Q |
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| T |
49070569 |
aagattcccaacatacaccttatgaggaccttcatagtatattgttcttcttctca |
49070514 |
T |
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