View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_43 (Length: 387)
Name: NF11980_high_43
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 25234028 - 25233658
Alignment:
| Q |
22 |
gaaacaaaacgggaaaaacctaaacagtaaggactctaagttcaaataaacgaaatttcactatggctacattaggtatgataaaatttaccgaacttaa |
121 |
Q |
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| T |
25234028 |
gaaacaaaacgggaaaaacctaaacagtaaggactctaagttcaaataaacgaaatttcactatggctacattaggtatgataaaatttaccgaacttaa |
25233929 |
T |
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| Q |
122 |
attcacaggcaccttacaaagacaaacagatagtgactggttggacatttgc-tactgttcatttcttatataataaggtagttatctgtcaaagaaaaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25233928 |
attcacaggcaccttacaaagacaaacagatagtgactggttggacatttgcaaactgttcatttcttatataataaggtagttatctgtcaaagaaaaa |
25233829 |
T |
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| Q |
221 |
agggtaactttggtg-----------------atatgtgttaccaaagatttta------------tttgaaaatgaatgtaaataaggtgtggcatgaa |
291 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
25233828 |
agggtaactttggtgatatctaacaaaggaaaatatgtgttaccaaagattttatttgagattttatttgaaaatgaatgtaaataaggtgcggcatgaa |
25233729 |
T |
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| Q |
292 |
tttgtcagcaaaggattagagcgtatttaaaatcacgttgagtttgacataatcacagtaataagtgagtg |
362 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
25233728 |
tttgtcagcaaaggattagagcgtgtttaaaatcacattgagtttgacataatcacaataataagtgagtg |
25233658 |
T |
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