View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_45 (Length: 383)
Name: NF11980_high_45
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 366
Target Start/End: Original strand, 52997712 - 52998075
Alignment:
| Q |
8 |
cacagagaacttaaatggccttatttgttttatttggtaaaaatggataacataacatatgcttcatagaaacataactgtatcaaactttgtgtatggg |
107 |
Q |
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| T |
52997712 |
cacagagaacttaaatggccttatttgttttatttggtaaaaatggataacataacatatgcttcatagaaacataactgtaacaaactttgtgtatggg |
52997811 |
T |
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| Q |
108 |
ctctcattgtttcttccttcttgggttactgcagcaggatatatactgtcgcaggcattgagtnnnnnnngatggaccaccttagattttctcaagataa |
207 |
Q |
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| T |
52997812 |
ctctcattgtttcttccttcttgggttactgcagcaggatgtatactgtcgcaggcattgagtcccccccgatggaccaccttagattttctcaagataa |
52997911 |
T |
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| Q |
208 |
aatttaatcaaacttacttatatgnnnnnnnnnnnnnnaattatattcatcttttgggcagtttcaaggtgaaatgcgcctcaaatacaagtaaagataa |
307 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52997912 |
aatttaatgaaacttacttatatgtttttttcctttttaattatattcatcttttgggctgtttcaaggtgaaatgcgcctcaaatacaagtaaagataa |
52998011 |
T |
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| Q |
308 |
aagtttagta-----nnnnnnnnnctttctttctgacaagagataaaagtttaatatttctact |
366 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52998012 |
aagtttagtattttttttttttttttttctttctgacaagagataaaagtttaatatttctact |
52998075 |
T |
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