View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_46 (Length: 376)
Name: NF11980_high_46
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_46 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 36436558 - 36436922
Alignment:
| Q |
12 |
atgaattaacagaaactaccatcagtgctcgctaaaagctaccttaatcaaatatttaatgtttcggttcatacnnnnnnnnatcagaattgagtttgta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36436558 |
atgaattaacagaaactaccatcagtgctcgctaaaagctaccttaatcaaatatttaatgtttcggttcatacttttttttatcagaattgagtttgta |
36436657 |
T |
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| Q |
112 |
gacatttctagaagttgttgagaaacaagtatgtgtagtcactttctagtattgtaaaatgaatactgttttagacctcatggtatatactagattttat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36436658 |
gacatttctagaagttgttgagaaacaagtatgtgtagtcactttgtggtattgtaaaatgaatactgttttagacctcatggtatatactagattttat |
36436757 |
T |
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| Q |
212 |
gttataactatgaaaatctgcattgctagaccaactgtgcataagtataaaatgtatgagatttttactcatgagttttgcaccattggaaatttctaag |
311 |
Q |
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| T |
36436758 |
gttatcactgtgaaaatctgcattgctaggccaactgtgcataagtataaaatgtataagatttttaatcatgagttttgcaccattggaaatttctaag |
36436857 |
T |
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| Q |
312 |
agcatactattatattaactggattttacattattcatacaaatacacgcttacagcgatgtggc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36436858 |
agcatactattatattaactggattttacattattcatacaaatacacgcttacagcgatgtggc |
36436922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 36377054 - 36377216
Alignment:
| Q |
12 |
atgaattaacagaaactaccatcagtgctcgctaaaagctaccttaatcaaatatttaatgtttcggttcatacnnnnnnnnatcagaattgagtttgta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||| ||| |||||||||||||| |
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| T |
36377054 |
atgaattaacagaaactaccatcagtgctcgctaaaagccaccttaatcaaatatgtaaatttttggttcata--tttttacatcggaattgagtttgta |
36377151 |
T |
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| Q |
112 |
gacatttc--tagaagttgttgagaaacaagtatgtgtagtcactttctagtattgtaaaatgaata |
176 |
Q |
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| T |
36377152 |
gacatttctttagaggtttttgag-aacaagtat-tgttgtcactttgtggtattgtaaaatgaata |
36377216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 36400488 - 36400650
Alignment:
| Q |
12 |
atgaattaacagaaactaccatcagtgctcgctaaaagctaccttaatcaaatatttaatgtttcggttcatacnnnnnnnnatcagaattgagtttgta |
111 |
Q |
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||||| |||| ||||||||||||| |||||||||||||||| |||||||||||| ||| ||| ||||||| ||| |||||||||||||| |
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| T |
36400488 |
atgaagtaactgaaactaccatcatcgctcgctaaaagctacattaatcaaatatgtaaattttttgttcata--gttttacatcggaattgagtttgta |
36400585 |
T |
|
| Q |
112 |
gacatttctagaagttgttgagaaacaagtatgtgtagtcactttctagtattgtaaaatgaata |
176 |
Q |
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|||||| ||||| ||| ||||||||||||||| ||| |||||| | | ||||||||||||||||| |
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| T |
36400586 |
gacattcctagaggtttttgagaaacaagtatctgttgtcactctgtggtattgtaaaatgaata |
36400650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 36371291 - 36371453
Alignment:
| Q |
12 |
atgaattaacagaaactaccatcagtgctcgctaaaagctaccttaatcaaatatttaatgtttcggttcatacnnnnnnnnatcagaattgagtttgta |
111 |
Q |
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|||||||||| || ||||| || |||||||||| |||||||||||||| ||||| |||| ||| ||||||||| ||||||||| ||||| || |
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| T |
36371291 |
atgaattaaccgagactactattagtgctcgctgaaagctaccttaattgaatatgtaattttttggttcatacttttct--atcagaattaagtttata |
36371388 |
T |
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| Q |
112 |
gacatttctagaagttgttgagaaacaagtatgtgtagtcactttctagtattgtaaaatgaata |
176 |
Q |
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||| |||| | | ||| || ||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
36371389 |
gacgtttcaataggttcttaagaaacaagtatgtgtagtcactttgcggtaatgtaaaatgaata |
36371453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 36407941 - 36408069
Alignment:
| Q |
12 |
atgaattaacagaaactaccatcagtgctcgctaaaagctaccttaatcaaatatttaatgtttcggttcatacnnnnnnnnatcagaattgagtttgta |
111 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||| ||| |||| |||| | | |||| |||||||| |
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| T |
36407941 |
atgaagtaacagaaactactatcagtgctcgctaaaagataccttaatcaaatatgtaaatttttggtttatactttcacct-tga-aatttagtttgta |
36408038 |
T |
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| Q |
112 |
gacatttctagaagttgttgagaaacaagta |
142 |
Q |
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| T |
36408039 |
gacatttctagaggttcttgagaaacaagta |
36408069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 36413064 - 36413192
Alignment:
| Q |
12 |
atgaattaacagaaactaccatcagtgctcgctaaaagctaccttaatcaaatatttaatgtttcggttcatacnnnnnnnnatcagaattgagtttgta |
111 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||| ||| |||| |||| | | |||| |||||||| |
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| T |
36413064 |
atgaagtaacagaaactactatcagtgctcgctaaaagataccttaatcaaatatgtaaatttttggtttatactttcacct-tga-aatttagtttgta |
36413161 |
T |
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| Q |
112 |
gacatttctagaagttgttgagaaacaagta |
142 |
Q |
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|||||||||||| ||| |||||||||||||| |
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| T |
36413162 |
gacatttctagaggttcttgagaaacaagta |
36413192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 36390305 - 36390342
Alignment:
| Q |
18 |
taacagaaactaccatcagtgctcgctaaaagctacct |
55 |
Q |
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| T |
36390305 |
taacagaaactaccatcagtgctcgttaaaagctacct |
36390342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 36430081 - 36430122
Alignment:
| Q |
12 |
atgaattaacagaaactaccatcagtgctcgctaaaagctac |
53 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
36430081 |
atgaactaacagaaactaccatcagtgctcgctgaaagctac |
36430122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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