View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_high_47 (Length: 365)

Name: NF11980_high_47
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_high_47
NF11980_high_47
[»] chr1 (22 HSPs)
chr1 (19-164)||(19139826-19139971)
chr1 (19-164)||(13505013-13505158)
chr1 (19-164)||(13649063-13649208)
chr1 (19-164)||(13419895-13420040)
chr1 (19-151)||(13542235-13542367)
chr1 (19-150)||(20476552-20476683)
chr1 (19-149)||(15900186-15900316)
chr1 (19-150)||(13669590-13669721)
chr1 (19-149)||(20367480-20367610)
chr1 (19-164)||(13609584-13609728)
chr1 (19-164)||(16469389-16469525)
chr1 (19-150)||(13683689-13683814)
chr1 (18-155)||(16497491-16497619)
chr1 (162-217)||(13420074-13420129)
chr1 (162-217)||(13505192-13505247)
chr1 (182-217)||(13542437-13542472)
chr1 (162-217)||(13609762-13609817)
chr1 (162-217)||(13649242-13649297)
chr1 (162-217)||(16469300-16469355)
chr1 (162-217)||(19139737-19139792)
chr1 (177-215)||(15900084-15900122)
chr1 (248-277)||(26674585-26674614)
[»] scaffold0006 (3 HSPs)
scaffold0006 (19-164)||(138244-138389)
scaffold0006 (19-150)||(167204-167335)
scaffold0006 (162-217)||(138423-138478)
[»] chr6 (6 HSPs)
chr6 (18-143)||(22285100-22285225)
chr6 (19-150)||(21813283-21813414)
chr6 (296-356)||(22284872-22284932)
chr6 (162-233)||(22284973-22285045)
chr6 (248-280)||(1505479-1505511)
chr6 (248-276)||(12757233-12757261)
[»] scaffold0012 (2 HSPs)
scaffold0012 (19-150)||(114798-114929)
scaffold0012 (94-150)||(107168-107224)
[»] chr8 (1 HSPs)
chr8 (19-150)||(20815711-20815842)
[»] scaffold0069 (1 HSPs)
scaffold0069 (19-149)||(25486-25616)
[»] scaffold0068 (2 HSPs)
scaffold0068 (19-151)||(42096-42228)
scaffold0068 (182-214)||(41994-42026)
[»] chr2 (5 HSPs)
chr2 (19-150)||(38058685-38058816)
chr2 (182-217)||(38058579-38058614)
chr2 (251-284)||(128669-128702)
chr2 (252-281)||(36387065-36387094)
chr2 (248-276)||(29419308-29419336)
[»] scaffold0406 (1 HSPs)
scaffold0406 (19-150)||(9148-9279)
[»] chr3 (2 HSPs)
chr3 (248-280)||(7014179-7014211)
chr3 (252-283)||(35119298-35119329)
[»] chr4 (2 HSPs)
chr4 (248-283)||(31312798-31312833)
chr4 (252-280)||(26441150-26441178)
[»] scaffold0115 (1 HSPs)
scaffold0115 (252-281)||(43113-43142)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 19139971 - 19139826
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||| |||||||||||| ||||||||| ||||    
T  19139971 tgcaattctatgaaagagatagtgttcagagacaacaattcaaatgaaaataatgatataactgatgaaaaaattgagtttcttcaattgcgttctttga 19139872  T
Q  119 ctttagaacatttggagacacttgacaatttcatctcatatcattt 164  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||    
T  19139871 ctttagaacatttggagacacttgataatttcttctcatattattt 19139826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 13505013 - 13505158
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  13505013 tgcaattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatattactgatgaaaaaatcgagtttcttcaattgcgttctttga 13505112  T
Q  119 ctttagaacatttggagacacttgacaatttcatctcatatcattt 164  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||    
T  13505113 ctttagaacatttggagacacttgataatttcttctcatattattt 13505158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 13649063 - 13649208
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  13649063 tgcaattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatattactgatgaaaaaatcgagtttcttcaattgcgttctttga 13649162  T
Q  119 ctttagaacatttggagacacttgacaatttcatctcatatcattt 164  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||    
T  13649163 ctttagaacatttggagacacttgataatttcttctcatattattt 13649208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 13419895 - 13420040
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  13419895 tgcaattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatattactgatgaaaaaatcgagtttcttcaattgcgttctttga 13419994  T
Q  119 ctttagaacatttggagacacttgacaatttcatctcatatcattt 164  Q
    |||||||||||||||| |||||||| |||||| |||||||| ||||    
T  13419995 ctttagaacatttggaaacacttgataatttcttctcatattattt 13420040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 13542235 - 13542367
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    ||||||||||||||||| ||||||||  ||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||| || || ||||    
T  13542235 tgcaattctatgaaggaaatagtgtttgaagacaacaattcaagtgcaaataatgatataactgatgaaaaaattgagtttcttctattacgctctttga 13542334  T
Q  119 ctttagaacatttggagacacttgacaatttca 151  Q
    ||||||||||||||||||||||||| |||||||    
T  13542335 ctttagaacatttggagacacttgataatttca 13542367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 20476552 - 20476683
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  20476552 tgcaattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttga 20476651  T
Q  119 ctttagaacatttggagacacttgacaatttc 150  Q
    |||||||||||||| |||||||||| ||||||    
T  20476652 ctttagaacatttgaagacacttgataatttc 20476683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 15900316 - 15900186
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||| |  ||||| ||| |||||||||||||| ||||||| ||||    
T  15900316 tgcaattctatgaaggagatagtgttcggagacaacaattcaagtgcaaataatgatatcaccgatgaaaaaattgagtttcttctactgcgttctttga 15900217  T
Q  119 ctttagaacatttggagacacttgacaattt 149  Q
    |||||||||||||| |||||||||| |||||    
T  15900216 ctttagaacatttgcagacacttgataattt 15900186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 13669590 - 13669721
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||  ||||||||  |||||||||||||| |||||| |||||||| |||||||| ||| |||||||||||| ||||||||  ||||    
T  13669590 tgcaattctatgaaggaagtagtgttcggagacaacaattcaagtgcaaaaaatgatatcattgatgaaaaaattgagtttcttcaattgcgttttttga 13669689  T
Q  119 ctttagaacatttggagacacttgacaatttc 150  Q
    ||||||||||||||||||||||||| ||||||    
T  13669690 ctttagaacatttggagacacttgataatttc 13669721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 20367480 - 20367610
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  20367480 tgcaattctatgaaggagatagtgttcagagacaacgattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttga 20367579  T
Q  119 ctttagaacatttggagacacttgacaattt 149  Q
    |||||||||||||| |||||||||| |||||    
T  20367580 ctttagaacatttgaagacacttgataattt 20367610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 13609584 - 13609728
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||| |||||||| || || ||||| ||||  |||||||||| ||||||||| ||||    
T  13609584 tgcaattctatgaaggagatagtgttcggagacaacaattcaagtgctaataatgagatcatcgatgaaaaatc-gagtttcttcaattgcgttctttga 13609682  T
Q  119 ctttagaacatttggagacacttgacaatttcatctcatatcattt 164  Q
    |||||||||||||||| |||||||| |||||| |||||||| ||||    
T  13609683 ctttagaacatttggaaacacttgataatttcttctcatattattt 13609728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 16469525 - 16469389
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||| ||||||||||||||| || |||||||||||||         || ||| |||||||||||| |||||| || ||||    
T  16469525 tgcaattctatgaaggagatagtgctcaaagacaacaatttaagtgcaaataatgat---------gaaaaaattgagtttcttcaattgcgatctttga 16469435  T
Q  119 ctttagaacatttggagacacttgacaatttcatctcatatcattt 164  Q
    ||||||||||||||||||||||||| |||||| |||| ||| ||||    
T  16469434 ctttagaacatttggagacacttgataatttcttctcttattattt 16469389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 13683689 - 13683814
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||| ||||      | | |||||| ||| | |||||||||| ||||||||| ||||    
T  13683689 tgcaattctatgaaggatatagtgttcagagacaacaattcaagtgctaata------tcagtgatgaaaaaatcgagtttcttcaattgcgttctttga 13683782  T
Q  119 ctttagaacatttggagacacttgacaatttc 150  Q
    ||||||||||||||||||||||||| ||||||    
T  13683783 ctttagaacatttggagacacttgataatttc 13683814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 16497619 - 16497491
Alignment:
Q  18 atgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattg 117  Q
    ||||||||||||||||||||||||| ||||||||||||||| || |||||||||         |||||| ||| |||||||||||| |||||  || ||     
T  16497619 atgcaattctatgaaggagatagtgctcaaagacaacaatttaagtgcaaataa---------tgatgaaaaaattgagtttcttcaattgcaatcttta 16497529  T
Q  118 actttagaacatttggagacacttgacaatttcatctc 155  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  16497528 actttagaacatttggagacacttgataatttcttctc 16497491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 13420074 - 13420129
Alignment:
Q  162 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 217  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  13420074 tttagagccgaatgtttctgcaccatttttcaattctcaggtatgttattttgttt 13420129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 13505192 - 13505247
Alignment:
Q  162 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 217  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  13505192 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 13505247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 13542437 - 13542472
Alignment:
Q  182 caccatttttcaatggtcaggtatgttattttgttt 217  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13542437 caccatttttcaatgctcaggtatgttattttgttt 13542472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 13609762 - 13609817
Alignment:
Q  162 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 217  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  13609762 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 13609817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 13649242 - 13649297
Alignment:
Q  162 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 217  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  13649242 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 13649297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 16469355 - 16469300
Alignment:
Q  162 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 217  Q
    |||||||||  |||||||| |||||||||||  || ||||||||||||||||||||    
T  16469355 tttagagccttatgtttctacaccatttttcggtgctcaggtatgttattttgttt 16469300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 19139792 - 19139737
Alignment:
Q  162 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 217  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  19139792 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 19139737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 15900122 - 15900084
Alignment:
Q  177 ttcttcaccatttttcaatggtcaggtatgttattttgt 215  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  15900122 ttctacaccatttttcaatgctcaggtatgttattttgt 15900084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 26674614 - 26674585
Alignment:
Q  248 ataaggactaaaaacttaattaaccctata 277  Q
    ||||||||||||||||||||||||||||||    
T  26674614 ataaggactaaaaacttaattaaccctata 26674585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 138244 - 138389
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  138244 tgcaattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttga 138343  T
Q  119 ctttagaacatttggagacacttgacaatttcatctcatatcattt 164  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||    
T  138344 ctttagaacatttggagacacttgataatttcttctcatattattt 138389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 167204 - 167335
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||  ||||||||  |||||||||||||| |||||| |||||||| |||||||| ||| |||||||||||| ||||||||  ||||    
T  167204 tgcaattctatgaaggaagtagtgttcggagacaacaattcaagtgcaaaaaatgatatcattgatgaaaaaattgagtttcttcaattgcgttttttga 167303  T
Q  119 ctttagaacatttggagacacttgacaatttc 150  Q
    ||||||||||||||||||||||||| ||||||    
T  167304 ctttagaacatttggagacacttgataatttc 167335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 138423 - 138478
Alignment:
Q  162 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 217  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  138423 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 138478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 22285225 - 22285100
Alignment:
Q  18 atgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattg 117  Q
    ||||||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||| | |||| ||| |||||||||||||||||||||| |||    
T  22285225 atgcaattctatgaaggagatagtgctcgaagacaacaattcatgtgcaaataatgatataactaatgaaaaaattgagtttcttctattgcgttctttg 22285126  T
Q  118 actttagaacatttggagacacttga 143  Q
    ||||||||||||||||||||||||||    
T  22285125 actttagaacatttggagacacttga 22285100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 21813283 - 21813414
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    ||||||||| ||||| |  |||||||   |||||||||||||| |||||| |||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  21813283 tgcaattctctgaagaaagtagtgtttggagacaacaattcaagtgcaaaaaatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttga 21813382  T
Q  119 ctttagaacatttggagacacttgacaatttc 150  Q
    ||||||||||||||||||||||||| ||||||    
T  21813383 ctttagaacatttggagacacttgataatttc 21813414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 22284932 - 22284872
Alignment:
Q  296 attatcaattcttagattgtgatgaagaatattgctcatcacttctcatattctctctctg 356  Q
    ||||||| |||| ||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  22284932 attatcatttctcagattttgatgaagcatattgctcatcacctctcatattctctctctg 22284872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 22285045 - 22284973
Alignment:
Q  162 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttg-tttcaaggttctctagata 233  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||| |||| ||| ||| |||||||||||    
T  22285045 tttagagcggaatgtttctacaccatttttcaatgctcaggtatgttactttgtttttaagcttctctagata 22284973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 1505511 - 1505479
Alignment:
Q  248 ataaggactaaaaacttaattaaccctataatt 280  Q
    ||||||| |||||||||||||||||||||||||    
T  1505511 ataaggattaaaaacttaattaaccctataatt 1505479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 12757261 - 12757233
Alignment:
Q  248 ataaggactaaaaacttaattaaccctat 276  Q
    |||||||||||||||||||||||||||||    
T  12757261 ataaggactaaaaacttaattaaccctat 12757233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 114798 - 114929
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  114798 tgcaattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttga 114897  T
Q  119 ctttagaacatttggagacacttgacaatttc 150  Q
    ||||||||||||||||||||||||| ||||||    
T  114898 ctttagaacatttggagacacttgataatttc 114929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 107168 - 107224
Alignment:
Q  94 gagtttcttctattgcgttcattgactttagaacatttggagacacttgacaatttc 150  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||    
T  107168 gagtttcttcaattgcgttctttgactttagaacaattggagacacttgataatttc 107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 20815842 - 20815711
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  20815842 tgcaattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttga 20815743  T
Q  119 ctttagaacatttggagacacttgacaatttc 150  Q
    ||||||||||||||||||||||||| ||||||    
T  20815742 ctttagaacatttggagacacttgataatttc 20815711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 25486 - 25616
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| |||||||||||| ||||||||| ||||    
T  25486 tgcaattctacgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaattgagtttcttcaattgcgttctttga 25585  T
Q  119 ctttagaacatttggagacacttgacaattt 149  Q
    ||||||||||||||||||||||||| |||||    
T  25586 ctttagaacatttggagacacttgataattt 25616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 42228 - 42096
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    ||||||||||||| ||| ||||||||  ||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||| || || ||||    
T  42228 tgcaattctatgagggaaatagtgtttgaagacaacaattcaagtgcaaataatgatataactgatgaaaaaattgagtttcttctattacgctctttga 42129  T
Q  119 ctttagaacatttggagacacttgacaatttca 151  Q
    ||||||||||||||||||||||||| |||||||    
T  42128 ctttagaacatttggagacacttgataatttca 42096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 42026 - 41994
Alignment:
Q  182 caccatttttcaatggtcaggtatgttattttg 214  Q
    ||||||||||||||| |||||||||||||||||    
T  42026 caccatttttcaatgctcaggtatgttattttg 41994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 38058816 - 38058685
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    |||||||||||||||||||||||||||  ||| ||||| |||| ||||||||||||||| | |||||| ||| |||||||||||||||||||||| || |    
T  38058816 tgcaattctatgaaggagatagtgttcggagataacaaatcaagtgcaaataatgatatcactgatgaaaaaattgagtttcttctattgcgttctttaa 38058717  T
Q  119 ctttagaacatttggagacacttgacaatttc 150  Q
    ||||||||||||||||||||||||| ||||||    
T  38058716 ctttagaacatttggagacacttgataatttc 38058685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 38058614 - 38058579
Alignment:
Q  182 caccatttttcaatggtcaggtatgttattttgttt 217  Q
    ||||||||||||||| ||||||||||||||||||||    
T  38058614 caccatttttcaatgctcaggtatgttattttgttt 38058579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 128702 - 128669
Alignment:
Q  251 aggactaaaaacttaattaaccctataattttta 284  Q
    |||||||||||||||||||| |||||||||||||    
T  128702 aggactaaaaacttaattaatcctataattttta 128669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 36387065 - 36387094
Alignment:
Q  252 ggactaaaaacttaattaaccctataattt 281  Q
    ||||||||||||||||||||||||||||||    
T  36387065 ggactaaaaacttaattaaccctataattt 36387094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 29419336 - 29419308
Alignment:
Q  248 ataaggactaaaaacttaattaaccctat 276  Q
    |||||||||||||||||||||||||||||    
T  29419336 ataaggactaaaaacttaattaaccctat 29419308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 9279 - 9148
Alignment:
Q  19 tgcaattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattga 118  Q
    ||||||||| |||||||||||||||||| ||| |||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| ||||    
T  9279 tgcaattctttgaaggagatagtgttcagagaaaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttga 9180  T
Q  119 ctttagaacatttggagacacttgacaatttc 150  Q
    ||||||||||||||||||||||||| ||||||    
T  9179 ctttagaacatttggagacacttgataatttc 9148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 7014211 - 7014179
Alignment:
Q  248 ataaggactaaaaacttaattaaccctataatt 280  Q
    |||||||||||||||||||||||||||||||||    
T  7014211 ataaggactaaaaacttaattaaccctataatt 7014179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 283
Target Start/End: Complemental strand, 35119329 - 35119298
Alignment:
Q  252 ggactaaaaacttaattaaccctataattttt 283  Q
    ||||||||||||||||||||||||||||||||    
T  35119329 ggactaaaaacttaattaaccctataattttt 35119298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 283
Target Start/End: Complemental strand, 31312833 - 31312798
Alignment:
Q  248 ataaggactaaaaacttaattaaccctataattttt 283  Q
    |||||||||||||||||||||||||||||| |||||    
T  31312833 ataaggactaaaaacttaattaaccctatatttttt 31312798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 26441178 - 26441150
Alignment:
Q  252 ggactaaaaacttaattaaccctataatt 280  Q
    |||||||||||||||||||||||||||||    
T  26441178 ggactaaaaacttaattaaccctataatt 26441150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 43113 - 43142
Alignment:
Q  252 ggactaaaaacttaattaaccctataattt 281  Q
    ||||||||||||||||||||||||||||||    
T  43113 ggactaaaaacttaattaaccctataattt 43142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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