View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_high_52 (Length: 341)

Name: NF11980_high_52
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_high_52
NF11980_high_52
[»] chr5 (3 HSPs)
chr5 (1-87)||(1717114-1717200)
chr5 (152-228)||(1717201-1717277)
chr5 (264-330)||(1717304-1717370)
[»] chr8 (2 HSPs)
chr8 (1-94)||(42221825-42221913)
chr8 (89-137)||(42221921-42221974)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1717114 - 1717200
Alignment:
Q  1 aatcagaataaatacgagcattagctatcatgaaatgaaaccacaactttgtttcatactttcttagaggtgaagatgtctagaagt 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717114 aatcagaataaatacgagcattagctatcatgaaatgaaaccacaactttgtttcatactttcttagaggtgaagatgtctagaagt 1717200  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 1717201 - 1717277
Alignment:
Q  152 gaagatatggtggtgctgctgttgctgcggatgtttctattattcccaataacaaatttccatgtccaatatttgtt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717201 gaagatatggtggtgctgctgttgctgcggatgtttctattattcccaataacaaatttccatgtccaatatttgtt 1717277  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 1717304 - 1717370
Alignment:
Q  264 atttatactgtctaacgtgtttcactttgataattttgctgttccttctagcacaatcaatgatgtc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717304 atttatactgtctaacgtgtttcactttgataattttgctgttccttctagcacaatcaatgatgtc 1717370  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 42221825 - 42221913
Alignment:
Q  1 aatcagaataaatacgagcattagctatcatgaaatgaaaccacaactttgtttcatactttcttagaggtgaagatgtctagaagtcaaatat 94  Q
    ||||||||||||||| |||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  42221825 aatcagaataaataccagcattagctatcatga-----aaccacaactttgtttcatactttcttagaggtgaagatgtctacaagttaaatat 42221913  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 42221921 - 42221974
Alignment:
Q  89 aaatattagtaagaatcaaattga-----acgttgcctaaaattgaaagtttat 137  Q
    ||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  42221921 aaatattagtaagaatcaaattgaacgacacgttgcctaaaattgaaagtttat 42221974  T

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