View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_high_57 (Length: 324)

Name: NF11980_high_57
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_high_57
NF11980_high_57
[»] chr8 (20 HSPs)
chr8 (1-276)||(42126237-42126512)
chr8 (145-276)||(13884488-13884619)
chr8 (146-275)||(13884706-13884835)
chr8 (138-276)||(11867899-11868036)
chr8 (145-276)||(29714541-29714672)
chr8 (146-276)||(42126601-42126731)
chr8 (171-276)||(2554067-2554172)
chr8 (192-274)||(14996678-14996761)
chr8 (146-276)||(29714759-29714889)
chr8 (215-265)||(2554002-2554052)
chr8 (212-265)||(14996608-14996661)
chr8 (212-265)||(29714691-29714744)
chr8 (185-276)||(15862541-15862632)
chr8 (145-243)||(43416262-43416360)
chr8 (187-272)||(26745959-26746044)
chr8 (212-265)||(42126532-42126585)
chr8 (192-272)||(26745309-26745389)
chr8 (212-262)||(13884638-13884688)
chr8 (285-314)||(14996600-14996629)
chr8 (244-276)||(15862422-15862454)
[»] chr7 (16 HSPs)
chr7 (144-276)||(28715640-28715772)
chr7 (141-276)||(28715859-28715994)
chr7 (143-258)||(30862215-30862330)
chr7 (145-276)||(41985909-41986040)
chr7 (147-276)||(6474281-6474411)
chr7 (141-276)||(6474498-6474632)
chr7 (187-276)||(30862437-30862526)
chr7 (146-276)||(47373462-47373594)
chr7 (171-276)||(47373679-47373784)
chr7 (145-218)||(41986183-41986256)
chr7 (212-262)||(41986058-41986108)
chr7 (212-265)||(47373612-47373665)
chr7 (192-272)||(6271188-6271268)
chr7 (187-272)||(38408121-38408206)
chr7 (192-272)||(38407478-38407558)
chr7 (199-272)||(6270272-6270345)
[»] chr1 (16 HSPs)
chr1 (144-276)||(10824586-10824718)
chr1 (142-276)||(37189565-37189699)
chr1 (171-276)||(18844484-18844589)
chr1 (145-314)||(22683140-22683311)
chr1 (147-276)||(15825738-15825865)
chr1 (146-271)||(37189368-37189492)
chr1 (144-264)||(18844677-18844798)
chr1 (144-276)||(19056368-19056500)
chr1 (171-274)||(10824393-10824496)
chr1 (146-276)||(19056150-19056280)
chr1 (189-276)||(22683358-22683445)
chr1 (212-264)||(22683290-22683342)
chr1 (212-265)||(10824514-10824567)
chr1 (212-265)||(19056295-19056348)
chr1 (212-262)||(18844608-18844658)
chr1 (212-258)||(37189495-37189541)
[»] chr4 (13 HSPs)
chr4 (140-276)||(39161282-39161418)
chr4 (143-276)||(55173470-55173603)
chr4 (144-276)||(39161504-39161636)
chr4 (144-276)||(47096798-47096928)
chr4 (145-264)||(50509357-50509476)
chr4 (139-265)||(55173327-55173454)
chr4 (28-145)||(40971173-40971289)
chr4 (144-276)||(47097017-47097146)
chr4 (187-276)||(37996106-37996195)
chr4 (212-265)||(47096947-47097001)
chr4 (39-145)||(27256836-27256941)
chr4 (212-264)||(39161436-39161488)
chr4 (192-272)||(9738164-9738243)
[»] chr2 (21 HSPs)
chr2 (145-312)||(2916377-2916545)
chr2 (146-314)||(16973064-16973234)
chr2 (148-276)||(44594455-44594583)
chr2 (144-264)||(44594246-44594367)
chr2 (145-276)||(40987656-40987787)
chr2 (171-276)||(38982774-38982879)
chr2 (145-276)||(16973281-16973412)
chr2 (141-264)||(38982552-38982675)
chr2 (144-264)||(11533673-11533794)
chr2 (171-276)||(24125876-24125975)
chr2 (171-276)||(2916594-2916699)
chr2 (144-276)||(13559519-13559650)
chr2 (152-276)||(40987863-40987987)
chr2 (171-276)||(24126146-24126245)
chr2 (212-265)||(16973213-16973266)
chr2 (212-265)||(44594383-44594436)
chr2 (199-276)||(13559357-13559434)
chr2 (212-265)||(38982702-38982755)
chr2 (212-265)||(2916526-2916579)
chr2 (212-265)||(24125804-24125857)
chr2 (146-213)||(24125670-24125737)
[»] scaffold0060 (1 HSPs)
scaffold0060 (145-276)||(22922-23053)
[»] chr6 (15 HSPs)
chr6 (142-272)||(24798843-24798973)
chr6 (146-272)||(2216799-2216925)
chr6 (145-276)||(24798624-24798755)
chr6 (151-314)||(11643754-11643919)
chr6 (142-265)||(11643977-11644099)
chr6 (144-276)||(18494732-18494862)
chr6 (144-240)||(24690353-24690449)
chr6 (146-276)||(18494949-18495079)
chr6 (148-232)||(24690607-24690691)
chr6 (212-265)||(11643898-11643951)
chr6 (28-95)||(14863175-14863243)
chr6 (211-263)||(24798770-24798822)
chr6 (212-265)||(24690504-24690557)
chr6 (192-272)||(9954853-9954933)
chr6 (187-272)||(9955590-9955675)
[»] chr3 (13 HSPs)
chr3 (141-314)||(51663245-51663420)
chr3 (145-276)||(51663467-51663598)
chr3 (140-276)||(40244619-40244756)
chr3 (171-276)||(46003465-46003570)
chr3 (187-276)||(20537967-20538056)
chr3 (147-276)||(20538151-20538280)
chr3 (144-276)||(46003246-46003378)
chr3 (145-276)||(40364040-40364171)
chr3 (212-265)||(46003393-46003446)
chr3 (149-257)||(40364194-40364301)
chr3 (212-258)||(20538076-20538122)
chr3 (145-208)||(40244873-40244936)
chr3 (212-265)||(51663399-51663452)
[»] scaffold0781 (1 HSPs)
scaffold0781 (146-272)||(5256-5382)
[»] chr5 (4 HSPs)
chr5 (141-276)||(21249357-21249492)
chr5 (28-95)||(38935551-38935619)
chr5 (212-262)||(21249511-21249561)
chr5 (230-276)||(21249579-21249625)
[»] scaffold0098 (1 HSPs)
scaffold0098 (28-145)||(46307-46423)
[»] scaffold0034 (1 HSPs)
scaffold0034 (198-262)||(108047-108111)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 42126237 - 42126512
Alignment:
Q  1 tttaattataaaatagctgatttaattgtctcaactatgaagggttttgtgcgctaattttggttttctctaaaatatcatttgcttttcataaagttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42126237 tttaattataaaatagctgatttaattgtctcaactatgaagggttttgtgcgctaattttggttttctctaaaatatcatttgcttttcataaagttca 42126336  T
Q  101 taaaatggaagagttttggtatttagtgtgacataaataattttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||| ||| |    
T  42126337 taaaatggaagagttttggtatttagtgtgacataaataattttaggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctc 42126436  T
Q  201 taactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42126437 taactataatttgtatcaatttggccccctatgttttgcttcgctactagttttagtcctttctggtagtttctct 42126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 13884488 - 13884619
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    |||||||||||||||||||||  || ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  13884488 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgt 13884587  T
Q  245 tactagttttagtcctttctggtagtttctct 276  Q
    |||||||||||||| |||||||||||||||||    
T  13884588 tactagttttagtcttttctggtagtttctct 13884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 13884835 - 13884706
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 245  Q
    ||||||||||||||||||||  || ||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||    
T  13884835 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgtt 13884736  T
Q  246 actagttttagtcctttctggtagtttctc 275  Q
    ||| ||||||||||||| || |||||||||    
T  13884735 actggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 138 - 276
Target Start/End: Complemental strand, 11868036 - 11867899
Alignment:
Q  138 taattttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgtttt 237  Q
    |||||||||||||||||||||||| |||  || ||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  11868036 taattttaggcttattcaatcacctggtc-cttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgtttt 11867938  T
Q  238 gcttcgttactagttttagtcctttctggtagtttctct 276  Q
    | || || ||||||||||||||||| || ||||||||||    
T  11867937 gatttgtcactagttttagtcctttatgttagtttctct 11867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 29714541 - 29714672
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    |||||||||||||||||||||  || ||||||||| ||| |||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| ||    
T  29714541 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgt 29714640  T
Q  245 tactagttttagtcctttctggtagtttctct 276  Q
    |||||| |||| || |||||| ||||||||||    
T  29714641 tactagctttaatcatttctgttagtttctct 29714672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 276
Target Start/End: Complemental strand, 42126731 - 42126601
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 245  Q
    ||||||||||||||||||||  || ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||  ||     
T  42126731 ggcttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtc 42126632  T
Q  246 actagttttagtcctttctggtagtttctct 276  Q
    |||| |||||||| |||||| ||||||||||    
T  42126631 actaattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 2554172 - 2554067
Alignment:
Q  171 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 270  Q
    ||||||||| ||| |||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||| ||||||| ||||    
T  2554172 aacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttctgttagt 2554073  T
Q  271 ttctct 276  Q
    ||||||    
T  2554072 ttctct 2554067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 14996761 - 14996678
Alignment:
Q  192 ttggttccctaactataatttgtaccaatttggtcccc-tatgttttgcttcgttactagttttagtcctttctggtagtttct 274  Q
    ||||| |||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 276
Target Start/End: Complemental strand, 29714889 - 29714759
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 245  Q
    ||||||||  |||||| |||  || ||||||||| ||| | | |||||||| || ||||||||||||||| ||||||||||| |||||||||||||| ||    
T  29714889 ggcttatttgatcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcatt 29714790  T
Q  246 actagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||| ||| ||  |||||||||    
T  29714789 actagttttagtcatttatgtcagtttctct 29714759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 2554002 - 2554052
Alignment:
Q  215 accaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttctg 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 14996608 - 14996661
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtcttttctg 14996661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 29714691 - 29714744
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttctg 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 15862632 - 15862541
Alignment:
Q  185 tctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 276  Q
    |||||||||| | ||||||||||||||||||  |||||||||| ||||| |||||| ||||||| |||||| | |||||   ||||||||||    
T  15862632 tctcaatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctct 15862541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 43416262 - 43416360
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    |||||||||||||||  ||||  || ||||||||| ||| ||| |||||  | |||||||||||||||||| ||||||  || ||||||||||| ||||    
T  43416262 aggcttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 26746044 - 26745959
Alignment:
Q  187 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 272  Q
    |||| ||||| |||||| ||||||||||||||| || |||| ||| |||||||| | |||| |||||  |||||||||| ||||||    
T  26746044 tcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccattaccagtttcggtcctttctgttagttt 26745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 42126532 - 42126585
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||| ||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagttttagtcttttctg 42126585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 26745309 - 26745389
Alignment:
Q  192 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 272  Q
    ||||| |||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  26745309 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 26745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 13884638 - 13884688
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 262  Q
    |||||||||||| || | ||||||||||| |||| ||||||||||||||||    
T  13884638 tgtaccaatttgatctcttatgttttgctccgttcctagttttagtccttt 13884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 14996600 - 14996629
Alignment:
Q  285 ttaacttatgtactaatttggtcccctatg 314  Q
    ||||||||||||||||||||||||||||||    
T  14996600 ttaacttatgtactaatttggtcccctatg 14996629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 15862422 - 15862454
Alignment:
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||||||| |||||||||||||    
T  15862422 ttactagttttagtcctttatggtagtttctct 15862454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 28715640 - 28715772
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    |||| |||||||||||||||||  || ||||||||||||| | | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  28715640 taggtttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcg 28715739  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    |||||||||||||||||||||||||||||||||    
T  28715740 ttactagttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 28715994 - 28715859
Alignment:
Q  141 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 240  Q
    ||||||||||||||||| |||||||  || ||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  28715994 ttttaggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgct 28715895  T
Q  241 tcgttactagttttagtcctttctggtagtttctct 276  Q
      || ||||||||||||| |||||| ||||||||||    
T  28715894 cagtcactagttttagtcatttctgttagtttctct 28715859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 30862215 - 30862330
Alignment:
Q  143 ttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttc 242  Q
    |||||||||||||||||  ||||  || ||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||     
T  30862215 ttaggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgcttt 30862314  T
Q  243 gttactagttttagtc 258  Q
    ||||||||||||||||    
T  30862315 gttactagttttagtc 30862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 41985909 - 41986040
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    |||||||||||||||||| ||  || ||||||||| ||| |||||||||| | |||||||||||||||||  |||||||||||| |||||||||||| ||    
T  41985909 aggcttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgt 41986008  T
Q  245 tactagttttagtcctttctggtagtttctct 276  Q
    ||||| ||||||||||||| | ||||||||||    
T  41986009 tactaattttagtcctttccgttagtttctct 41986040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 276
Target Start/End: Original strand, 6474281 - 6474411
Alignment:
Q  147 gcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatg-ttttgcttcgtt 245  Q
    ||||||||||| ||| | |  || ||||||||| ||| |||||||||| | ||||||||||||||| || ||||||||||||||||| |||||||| |||    
T  6474281 gcttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgtt 6474380  T
Q  246 actagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||| |||||| ||||||||||    
T  6474381 actagttttagtcttttctgttagtttctct 6474411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 6474632 - 6474498
Alignment:
Q  141 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 240  Q
    ||||||||||||||||||||||| |  || ||||||||| ||| ||| ||||||||  ||||||||||| ||||||| ||||| |||| |||| ||||||    
T  6474632 ttttaggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgct 6474534  T
Q  241 tcgttactagttttagtcctttctggtagtttctct 276  Q
      |||||||||||||||||||| || ||||||||||    
T  6474533 ctgttactagttttagtcctttatgttagtttctct 6474498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 30862526 - 30862437
Alignment:
Q  187 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 276  Q
    ||||||| ||||||||||||||||||||| |||||||||||| |||||||||||  ||||||| |||||||| |||||| ||||||||||    
T  30862526 tcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttactaattttagtcttttctgttagtttctct 30862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 47373462 - 47373594
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactata--atttgtaccaatttggtcccctatgttttgcttcg 243  Q
    ||||||||||||||| || |  || ||||||||| ||| |||||||||| | | |||| ||||  ||||||||||||||||||||||||||||||||  |    
T  47373462 ggcttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctg 47373561  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    || |||||||||||| ||| || ||||||||||    
T  47373562 ttgctagttttagtcatttatgttagtttctct 47373594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 47373784 - 47373679
Alignment:
Q  171 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 270  Q
    ||||||||| ||| |||||||||||| |||||| |||||||||||||||||| ||| | ||||||||| |  ||||||||||||| |||||| || ||||    
T  47373784 aacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatcctttatgttagt 47373685  T
Q  271 ttctct 276  Q
    ||||||    
T  47373684 ttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 41986256 - 41986183
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtacca 218  Q
    |||||||||||||||||||||| || |||||||||  || |||||||||| | |||||||||||||||||||||    
T  41986256 aggcttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 262  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 47373612 - 47373665
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagtcgtttctg 47373665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 6271268 - 6271188
Alignment:
Q  192 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 272  Q
    ||||| |||||| ||||||||||||||| || ||||  || |||||||| ||||||||||||  |||||||||| ||||||    
T  6271268 ttggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttctgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 38408206 - 38408121
Alignment:
Q  187 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 272  Q
    |||| ||||| |||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  38408206 tcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 38407478 - 38407558
Alignment:
Q  192 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 272  Q
    ||||| |||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  38407478 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 6270272 - 6270345
Alignment:
Q  199 cctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 272  Q
    ||||| ||||||||||||||| || |||| ||| || ||||| ||||||||||||  ||| |||||| ||||||    
T  6270272 cctaaatataatttgtaccaaattcgtcctctaagtgttgctccgttactagtttcggtcttttctgttagttt 6270345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 10824718 - 10824586
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    |||||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  10824718 taggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcg 10824619  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||||||||| |||||||||||    
T  10824618 ttactagttttagtcctttctagtagtttctct 10824586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 37189699 - 37189565
Alignment:
Q  142 tttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgctt 241  Q
    ||||| |||||||||||||| |||  || ||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  37189699 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgctt 37189600  T
Q  242 cgttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||||| |||||||||||||||||    
T  37189599 cgttactagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 18844484 - 18844589
Alignment:
Q  171 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 270  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18844484 aacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcatttctggtagt 18844583  T
Q  271 ttctct 276  Q
    ||||||    
T  18844584 ttctct 18844589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 145 - 314
Target Start/End: Original strand, 22683140 - 22683311
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    ||||||||||||||||||| |   | ||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||    
T  22683140 aggcttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgt 22683239  T
Q  245 tactagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 314  Q
    ||||||||||||||||||||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  22683240 tactagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 15825865 - 15825738
Alignment:
Q  147 gcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 246  Q
    |||||||||||||||||||  || ||||||||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15825865 gcttattcaatcacccggtctcttaacttaattgattgtctcaatttggt--cctaactataatttgtaccaatttggtcccctatgttttgctttgtta 15825768  T
Q  247 ctagttttagtcctttctggtagtttctct 276  Q
     ||||||||||||||| |  ||||||||||    
T  15825767 ttagttttagtcctttttattagtttctct 15825738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 37189368 - 37189492
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 245  Q
    ||||||||||||||||||||  || ||||||||| ||| ||||||||||||  | ||||||||||||||||||||||||||| |||||||||||| ||||    
T  37189368 ggcttattcaatcacccggtc-cttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgtt 37189466  T
Q  246 actagttttagtcctttctggtagtt 271  Q
    |||||||||||||||||||| |||||    
T  37189467 actagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 18844798 - 18844677
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggt-tccctaactataatttgtaccaatttggtcccctatgttttgcttc 242  Q
    |||||||||||||||||||| |  || ||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |    
T  18844798 taggcttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctcc 18844699  T
Q  243 gttactagttttagtcctttct 264  Q
    ||||||||||||||| ||||||    
T  18844698 gttactagttttagttctttct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 19056500 - 19056368
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    |||||||||||||||| |||||  || ||||||||| ||| | | |||||||| ||||||||||||| ||||||||||||||  |||||||||||||| |    
T  19056500 taggcttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttg 19056401  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||| ||||||  |||||||||    
T  19056400 ttactagttttagtcatttctgtcagtttctct 19056368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 10824393 - 10824496
Alignment:
Q  171 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 270  Q
    ||||||||| |||||  ||||||||| |||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  10824393 aacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcctttctgttagt 10824492  T
Q  271 ttct 274  Q
    ||||    
T  10824493 ttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 19056150 - 19056280
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 245  Q
    |||||||||||||||| | |  || ||||||||| ||| | | |||||||| |||||| ||||||||||| |||||||||||||||| |||||||| |||    
T  19056150 ggcttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgtt 19056249  T
Q  246 actagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||| |||||| ||||||||||    
T  19056250 actagttttagtcttttctgttagtttctct 19056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 22683445 - 22683358
Alignment:
Q  189 aatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 276  Q
    |||||||| |||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctct 22683358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 22683290 - 22683342
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttct 264  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 10824567 - 10824514
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttctg 10824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 19056348 - 19056295
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagtttaagtcttttctg 19056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 18844608 - 18844658
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 262  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||||||||    
T  18844608 tgtaccaatttagtcccctatgttttactccgttcctagttttagtccttt 18844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 37189541 - 37189495
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 258  Q
    |||||||||| |||||||| ||||||||| |||| ||||||||||||    
T  37189541 tgtaccaattcggtcccctgtgttttgctccgttcctagttttagtc 37189495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 39161282 - 39161418
Alignment:
Q  140 attttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgc 239  Q
    |||||||||||||||||||||||| |   | ||||||||| | | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39161282 attttaggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgc 39161381  T
Q  240 ttcgttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||||||||||||||  |||||||||    
T  39161382 ttcgttactagttttagtcctttctgaaagtttctct 39161418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 276
Target Start/End: Complemental strand, 55173603 - 55173470
Alignment:
Q  143 ttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttc 242  Q
    |||||||||||||||||||||||  || ||||||||| ||| |||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||     
T  55173603 ttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgcttt 55173504  T
Q  243 gttactagttttagtcctttctggtagtttctct 276  Q
    |||||| ||||||||| ||| || ||||||||||    
T  55173503 gttacttgttttagtcttttttgctagtttctct 55173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 39161636 - 39161504
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    ||||||||||||| || |||||| || ||||||||| ||| | | |||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||    
T  39161636 taggcttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccg 39161537  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    ||| |||||||||||||||||| ||||||||||    
T  39161536 ttattagttttagtcctttctgttagtttctct 39161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 47096798 - 47096928
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    |||||||||||||||||| | |  || ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||||    
T  47096798 taggcttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaatttgc-cccctatgttttgcttcg 47096895  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    ||||| ||||||||||||| || | ||||||||    
T  47096896 ttacttgttttagtcctttatgtttgtttctct 47096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 264
Target Start/End: Complemental strand, 50509476 - 50509357
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    ||||||||||||||| | | |  || ||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  50509476 aggcttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 50509377  T
Q  245 tactagttttagtcctttct 264  Q
    ||||| |||||||| |||||    
T  50509376 tactaattttagtcttttct 50509357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 55173327 - 55173454
Alignment:
Q  139 aattttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggt-cccctatgtttt 237  Q
    |||||| ||||||||| |||| |||||| || ||||||||| ||| ||| |||||||| ||||||||||||||||||  |||||||| ||||||| ||||    
T  55173327 aatttttggcttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatatttt 55173426  T
Q  238 gcttcgttactagttttagtcctttctg 265  Q
    ||| ||||||||||||||||||||||||    
T  55173427 gctccgttactagttttagtcctttctg 55173454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 40971173 - 40971289
Alignment:
Q  28 gtctcaactatgaagggttttgtgcgctaattttggttttctct-aaaatatcatttgcttttcataaagtttataaaatggaagagttttggtatttag 126  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||  |||||| ||| |||| ||| ||||| ||||||||    
T  40971173 gtctcaactatgaagggttttgtgcgctaacttttgttttctctaaaaatatcatttggttttc--aaagttcatacaatgaaagggttttagtatttag 40971270  T
Q  127 tgtgacataaataatttta 145  Q
    ||||||||||||| |||||    
T  40971271 tgtgacataaatattttta 40971289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 47097146 - 47097017
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    |||||||||||||||| ||| |  || ||||||||| ||| ||||||||| || | |||||||||||||||||||||||| |   |||||||||||  ||    
T  47097146 taggcttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccg 47097050  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||| ||| || ||||||||||    
T  47097049 ttactagttttagtcatttttgttagtttctct 47097017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 37996106 - 37996195
Alignment:
Q  187 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 276  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||| |  ||||||||||    
T  37996106 tcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttattagttttagtcttttttattagtttctct 37996195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 47096947 - 47097001
Alignment:
Q  212 tgtaccaatttggtcccc-tatgttttgcttcgttactagttttagtcctttctg 265  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttctg 47097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 27256836 - 27256941
Alignment:
Q  39 gaagggttttgtgcgctaattttggttttctct-aaaatatcatttgcttttcataaagtttataaaatggaagagttttggtatttagtgtgacataaa 137  Q
    ||||| ||||||||||||| ||| ||||||||| ||||||||||||| |||||  |||||| ||| |||| ||| ||| |  ||| ||||||||||||||    
T  27256836 gaaggattttgtgcgctaacttttgttttctctaaaaatatcatttggttttc--aaagttcatacaatgaaagggttataatatctagtgtgacataaa 27256933  T
Q  138 taatttta 145  Q
    || |||||    
T  27256934 tattttta 27256941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 39161436 - 39161488
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttct 264  Q
    ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttct 39161488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 9738164 - 9738243
Alignment:
Q  192 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 272  Q
    ||||| |||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||  ||||||| || ||||||    
T  9738164 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttac-agtttcggtcctttttgttagttt 9738243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 145 - 312
Target Start/End: Original strand, 2916377 - 2916545
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    ||||||||||||||||||| |  || ||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||    
T  2916377 aggcttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 2916476  T
Q  245 tactagttttagtcctttctggtagtttctct-nnnnnnnnttaacttatgtactaatttggtccccta 312  Q
    ||||||||||| ||||||||| ||||||||||         ||||||||||||| ||||||||||||||    
T  2916477 tactagttttaatcctttctgttagtttctctcaaaaaacgttaacttatgtaccaatttggtccccta 2916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 146 - 314
Target Start/End: Original strand, 16973064 - 16973234
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 245  Q
    ||||||||||||||||||||  || ||||||||| ||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16973064 ggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgtt 16973163  T
Q  246 actagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 314  Q
    |||||||||| | ||||||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  16973164 actagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 148 - 276
Target Start/End: Complemental strand, 44594583 - 44594455
Alignment:
Q  148 cttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 247  Q
    ||||||||||||||||||   | || |||||| ||| |||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  248 tagttttagtcctttctggtagtttctct 276  Q
    ||||||||||| |||||||||||||||||    
T  44594483 tagttttagtcatttctggtagtttctct 44594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 144 - 264
Target Start/End: Original strand, 44594246 - 44594367
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggt-tccctaactataatttgtaccaatttggtcccctatgttttgcttc 242  Q
    ||||||||||||||||||||||  || ||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||      
T  44594246 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctct 44594345  T
Q  243 gttactagttttagtcctttct 264  Q
    ||||||||||||||| ||||||    
T  44594346 gttactagttttagttctttct 44594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 40987656 - 40987787
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    ||||||||| ||||| |||||  || ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||| || ||    
T  40987656 aggcttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgt 40987755  T
Q  245 tactagttttagtcctttctggtagtttctct 276  Q
    |||||||||||||| ||| || ||||||||||    
T  40987756 tactagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 38982879 - 38982774
Alignment:
Q  171 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 270  Q
    ||||||||| ||| |||||||||||| || ||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||| |||||||||||    
T  38982879 aacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcatttctggtagt 38982780  T
Q  271 ttctct 276  Q
    ||||||    
T  38982779 ttctct 38982774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 16973412 - 16973281
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    ||||||||||||||||  |||  || ||||||||| ||| |||||||||||| |||||||||||||||||  ||||||||||| |||||||||||| | |    
T  16973412 aggcttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccat 16973313  T
Q  245 tactagttttagtcctttctggtagtttctct 276  Q
    |||||||||||||| ||||||  |||||||||    
T  16973312 tactagttttagtcatttctgtcagtttctct 16973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 264
Target Start/End: Original strand, 38982552 - 38982675
Alignment:
Q  141 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 240  Q
    |||| |||||| ||||||||||| |   | ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||   |||||||||||    
T  38982552 tttttggcttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgct 38982651  T
Q  241 tcgttactagttttagtcctttct 264  Q
    ||||| ||||||||||||||||||    
T  38982652 tcgttgctagttttagtcctttct 38982675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 11533794 - 11533673
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggt-cccctatgttttgcttc 242  Q
    |||||||||||||||| | |||  || ||||||| | ||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||     
T  11533794 taggcttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgcttt 11533695  T
Q  243 gttactagttttagtcctttct 264  Q
     ||||||||||||||| |||||    
T  11533694 attactagttttagtcatttct 11533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 24125975 - 24125876
Alignment:
Q  171 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 270  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||      ||||||||||| ||||||| ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 2916699 - 2916594
Alignment:
Q  171 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 270  Q
    ||||||||| ||| |||||||||||| |||||||||| ||||||||||| ||| ||| |||| |||||||  |||||||||||| |||||||||| ||||    
T  2916699 aacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttactagttttggtcctttctgttagt 2916600  T
Q  271 ttctct 276  Q
    ||||||    
T  2916599 ttctct 2916594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 13559650 - 13559519
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    |||||||||||||||| |||||  || ||||||||| ||| | ||||||||||||||||||||||||||||| ||| |||||||| | || ||||||  |    
T  13559650 taggcttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctg 13559552  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    ||||||| ||||||| ||| || ||||||||||    
T  13559551 ttactagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 40987987 - 40987863
Alignment:
Q  152 ttcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagt 251  Q
    ||||||||||||||  || ||||||||||||| |||||||||| | | ||||||||||||||||  ||||||||||||||| |||||||   || ||| |    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaat 40987888  T
Q  252 tttagtcctttctggtagtttctct 276  Q
    ||||||| |||||| ||||||||||    
T  40987887 tttagtcatttctgttagtttctct 40987863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 24126245 - 24126146
Alignment:
Q  171 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 270  Q
    ||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||      |||||||||||||||| || ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 16973213 - 16973266
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctg 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 44594436 - 44594383
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttctg 44594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 13559357 - 13559434
Alignment:
Q  199 cctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||||  |||||||||| | ||| ||||| || |||| ||||||||||| |||||| ||||||||||    
T  13559357 cctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 38982755 - 38982702
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||||||||| ||||||||||| |||| || ||||||||||||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttctg 38982702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 2916526 - 2916579
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||| ||||||    
T  2916526 tgtaccaatttggtcccctacattttgctccgttattagttttagtcttttctg 2916579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 24125857 - 24125804
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    |||| ||||||||||||||||||||||||  |||| ||||||||||| ||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagttttagtcatttctg 24125804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 24125670 - 24125737
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttg 213  Q
    |||||||||| ||| |||||  || ||||||||| ||| |||||||||| | ||||||||||||||||    
T  24125670 ggcttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 23053 - 22922
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    |||||||||||||||||||||  || ||||||||| ||| ||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||    
T  23053 aggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgt 22954  T
Q  245 tactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||||||||| ||||||||||    
T  22953 tactagttttagtcctttctgttagtttctct 22922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 142 - 272
Target Start/End: Complemental strand, 24798973 - 24798843
Alignment:
Q  142 tttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgctt 241  Q
    |||||||||||||||||||||| |  || || |||||| ||| ||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||    
T  24798973 tttaggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctt 24798874  T
Q  242 cgttactagttttagtcctttctggtagttt 272  Q
    ||||||||||||||||||||||| |||||||    
T  24798873 cgttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 2216925 - 2216799
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 245  Q
    |||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  2216925 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2216826  T
Q  246 actagttttagtcctttctggtagttt 272  Q
    | ||||||||||| ||| || ||||||    
T  2216825 attagttttagtcatttatgttagttt 2216799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 24798624 - 24798755
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    ||||||||||||| |  ||||  || |||||||||  || | |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  24798624 aggcttattcaattattcggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgt 24798723  T
Q  245 tactagttttagtcctttctggtagtttctct 276  Q
    |||||||||||||| |||||| ||||||||||    
T  24798724 tactagttttagtcatttctgttagtttctct 24798755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 151 - 314
Target Start/End: Original strand, 11643754 - 11643919
Alignment:
Q  151 attcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactag 250  Q
    |||||||||||||||  || || |||||| ||| |||||||||| | |||||||||||||||||| ||||||||| |||||||||||| || ||||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  251 ttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 314  Q
    |||||||||| |||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  11643854 ttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatg 11643919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 11644099 - 11643977
Alignment:
Q  142 tttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggt-tccctaactataatttgtaccaatttggtcccctatgttttgct 240  Q
    ||||||||||||||||||||||||  || ||||||||| ||| ||||||||||||  |||||||||||||||||| ||||||||| ||||||||||| ||    
T  11644099 tttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-ct 11644002  T
Q  241 tcgttactagttttagtcctttctg 265  Q
    | |||||||||||||||| ||||||    
T  11644001 ttgttactagttttagtcttttctg 11643977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 18494732 - 18494862
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    |||||||||||||||||  |||  || ||||| ||| ||| |||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| |    
T  18494732 taggcttattcaatcacatggtcccttaactttattgattgtctcaatttggt-ccctagctataatttgtaccattttggtcccctatg-tttgctttg 18494829  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||||||| || ||||||||||    
T  18494830 ttactagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 24690353 - 24690449
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 240  Q
    ||||||||||||||||||||||  || ||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  24690353 taggcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 276
Target Start/End: Complemental strand, 18495079 - 18494949
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 245  Q
    |||||||||||||| |  ||  || ||||||||| ||||| | |||||| | || ||||||||||||||| |||||||||||||||| ||||| | ||||    
T  18495079 ggcttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgtt 18494980  T
Q  246 actagttttagtcctttctggtagtttctct 276  Q
    | |||||||||| ||||||| ||||||||||    
T  18494979 attagttttagttctttctgttagtttctct 18494949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  148 cttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctat 232  Q
    |||||||||||||||| |  || ||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||    
T  24690691 cttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 11643898 - 11643951
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttctg 11643951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 14863175 - 14863243
Alignment:
Q  28 gtctcaactatgaagggttttgtgcgctaattttggttttctct-aaaatatcatttgcttttcataaa 95  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||| ||||||||||    
T  14863175 gtcttaactatgaagggttttgtgtgctaattttggttttatctaaaaatgtcatttggttttcataaa 14863243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 24798822 - 24798770
Alignment:
Q  211 ttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 263  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttc 24798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 24690557 - 24690504
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||||||||||||| |||||||||||||   ||| ||||||||||||||||||    
T  24690557 tgtaccaatttggtctcctatgttttgctctattaatagttttagtcctttctg 24690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 9954853 - 9954933
Alignment:
Q  192 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 272  Q
    ||||| |||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||  ||||||| || ||||||    
T  9954853 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagtttcggtcctttatgttagttt 9954933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 9955675 - 9955590
Alignment:
Q  187 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 272  Q
    |||| ||||| |||||| ||||||||||||||| ||  ||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  9955675 tcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 141 - 314
Target Start/End: Original strand, 51663245 - 51663420
Alignment:
Q  141 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 240  Q
    |||| |||||||| |||||||||||  || ||||||||| ||| | | ||| |||| | |||||||||||||||| |||||| |||||||||||||||||    
T  51663245 tttttggcttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgct 51663344  T
Q  241 tcgttactagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 314  Q
    |||||||||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||    
T  51663345 tcgttactagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatg 51663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 51663598 - 51663467
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    ||||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||  ||    
T  51663598 aggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgt 51663499  T
Q  245 tactagttttagtcctttctggtagtttctct 276  Q
    |||||||||||||| |||||| ||||||||||    
T  51663498 tactagttttagtcatttctgttagtttctct 51663467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 40244619 - 40244756
Alignment:
Q  140 attttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttgg-tcccctatgttttg 238  Q
    |||| ||||||||||||||| ||| |  || ||||||||| ||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  40244619 atttcaggcttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttg 40244718  T
Q  239 cttcgttactagttttagtcctttctggtagtttctct 276  Q
    ||| |||||||||||||||| |||||| ||||||||||    
T  40244719 ctttgttactagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 46003570 - 46003465
Alignment:
Q  171 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 270  Q
    ||||||||| ||| |||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  46003570 aacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcattactagttttagtcctttctggtagt 46003471  T
Q  271 ttctct 276  Q
    ||||||    
T  46003470 ttctct 46003465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 20537967 - 20538056
Alignment:
Q  187 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 276  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  20537967 tcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattactagttttagtcctttctattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 20538280 - 20538151
Alignment:
Q  147 gcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 246  Q
    |||||||||||||||||||   | || |||||| ||| |||||||||| | |||||||||||||||||| |||||| ||   |||||||||||| |||||    
T  20538280 gcttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgtta 20538181  T
Q  247 ctagttttagtcctttctggtagtttctct 276  Q
    |||||||||||| |||||| ||||||||||    
T  20538180 ctagttttagtcatttctgttagtttctct 20538151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 46003246 - 46003378
Alignment:
Q  144 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 243  Q
    |||| |||||||||||||||||   | ||||||||| ||| | | |||||||| |||||||||||||||||| ||||||||||| ||||||| || |  |    
T  46003246 taggtttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctg 46003345  T
Q  244 ttactagttttagtcctttctggtagtttctct 276  Q
    |||| |||||||||||||| || ||||||||||    
T  46003346 ttacaagttttagtcctttttgttagtttctct 46003378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 40364040 - 40364171
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 244  Q
    |||||||||| |||||||  |  || ||||||||| ||||||| |||||||| || ||| ||||||||||| ||||||| |||||| | ||||||| |||    
T  40364040 aggcttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgt 40364139  T
Q  245 tactagttttagtcctttctggtagtttctct 276  Q
    || ||||||||||| ||| || ||||||||||    
T  40364140 tattagttttagtcatttttgttagtttctct 40364171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 46003446 - 46003393
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctg 46003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  149 ttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 248  Q
    ||||||||||||  |||  || ||||||||| ||| | ||||||||||  ||||||||||||||||||||||||| | |||||||||||| | |||||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttact 40364203  T
Q  249 agttttagt 257  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 20538076 - 20538122
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 258  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtc 20538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 40244936 - 40244873
Alignment:
Q  145 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactata 208  Q
    |||||||||||||||||| ||  || ||||||||| ||| |||||||||||| |||||||||||    
T  40244936 aggcttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 51663399 - 51663452
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 265  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||||| ||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagtcatttctg 51663452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 5382 - 5256
Alignment:
Q  146 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 245  Q
    |||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  5382 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 5283  T
Q  246 actagttttagtcctttctggtagttt 272  Q
    | ||||||||||| ||| || ||||||    
T  5282 attagttttagtcatttatgttagttt 5256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 141 - 276
Target Start/End: Original strand, 21249357 - 21249492
Alignment:
Q  141 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 240  Q
    |||| |||||||||||||||| |||  || | | ||||| ||| |||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||    
T  21249357 ttttcggcttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgct 21249456  T
Q  241 tcgttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||||||| ||||||||| ||||||||||    
T  21249457 tcgttactagttttaatcctttctgttagtttctct 21249492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 38935619 - 38935551
Alignment:
Q  28 gtctcaactatgaagggttttgtgcgctaattttggttttctctaaa-atatcatttgcttttcataaa 95  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||    
T  38935619 gtctcaactatgaagggttttgtgtgctaattttggttttctctaaacatatcatttggttttcataaa 38935551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  212 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 262  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 21249625 - 21249579
Alignment:
Q  230 tatgttttgcttcgttactagttttagtcctttctggtagtttctct 276  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctct 21249579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 46307 - 46423
Alignment:
Q  28 gtctcaactatgaagggttttgtgcgctaattttggttttctctaaaa-tatcatttgcttttcataaagtttataaaatggaagagttttggtatttag 126  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||  |||||| ||| |||| ||||||||| ||||||||    
T  46307 gtctcaactatgaagggttttgtgcgctaacttttgttttctctaaaattatcatttggttttc--aaagttcatacaatgaaagagttttagtatttag 46404  T
Q  127 tgtgacataaataatttta 145  Q
     |||||||||||| |||||    
T  46405 cgtgacataaatattttta 46423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 108047 - 108111
Alignment:
Q  198 ccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 262  Q
    ||||||| |||||||||| ||||||||||| || ||||||||| | |||||||||||||||||||    
T  108047 ccctaaccataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University