View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_62 (Length: 302)
Name: NF11980_high_62
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 45363613 - 45363890
Alignment:
| Q |
1 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaatacaattctgataaagaattgtaaatc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45363613 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataactga-----aattgctaatacaattctgataaagaattgtaaatc |
45363707 |
T |
|
| Q |
101 |
aatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggagagaagggacataattccaagaaggca |
200 |
Q |
| |
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||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45363708 |
aatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggagagaagggacataattccaagaaggca |
45363799 |
T |
|
| Q |
201 |
gaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttcatctc |
291 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45363800 |
gaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttcatctc |
45363890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 45382432 - 45382709
Alignment:
| Q |
1 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaatacaattctgataaagaattgtaaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45382432 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataactga-----aattgctaatacaattctgataaagaattgtaaatc |
45382526 |
T |
|
| Q |
101 |
aatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggagagaagggacataattccaagaaggca |
200 |
Q |
| |
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||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382527 |
aatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggagagaagggacataattccaagaaggca |
45382618 |
T |
|
| Q |
201 |
gaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttcatctc |
291 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382619 |
gaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttcatctc |
45382709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 76 - 291
Target Start/End: Original strand, 45374923 - 45375130
Alignment:
| Q |
76 |
caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
45374923 |
caattctgataaagaattgtaaatcaatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggaga |
45375014 |
T |
|
| Q |
176 |
gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaatta |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45375015 |
gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaatta |
45375114 |
T |
|
| Q |
276 |
tattagagttcatctc |
291 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
45375115 |
tattagagttcatctc |
45375130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 45354134 - 45354298
Alignment:
| Q |
1 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaatacaattctgataaagaattgtaaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45354134 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctgaaattgctaatacaattctgataaagaattgtaaatc |
45354228 |
T |
|
| Q |
101 |
aatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggagagaa |
178 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45354229 |
aatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataacagaaacaggagagaa |
45354298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 45356695 - 45356859
Alignment:
| Q |
1 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaatacaattctgataaagaattgtaaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45356695 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctgaaattgctaatacaattctgataaagaattgtaaatc |
45356789 |
T |
|
| Q |
101 |
aatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggagagaa |
178 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45356790 |
aatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataacagaaacaggagagaa |
45356859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 45370436 - 45370600
Alignment:
| Q |
1 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaatacaattctgataaagaattgtaaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
45370436 |
gaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctgaaattgctaatacaattctgataaagaattgtaaatc |
45370530 |
T |
|
| Q |
101 |
aatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggagagaa |
178 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45370531 |
aatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataacagaaacaggagagaa |
45370600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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