View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_74 (Length: 270)
Name: NF11980_high_74
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_74 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 37773249 - 37773506
Alignment:
| Q |
13 |
agatggagaacaaaaagcgtgagtcgtaaaagaaattgcatttgagtgataattggagagtgaggaaaaacgttttagcatgccattttaatgacccaaa |
112 |
Q |
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| T |
37773249 |
agatggagaacaaaaaacgtgaatcgtaaaagaaattccatttgagtgataactagagagtgaggaaaaacgttttagcgtgccgttttaatgacccaaa |
37773348 |
T |
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| Q |
113 |
gtaatgggaagcgtgaaattttttagattggtaggaaagtcaatattaaatcagttaaatgggaaactagtctaaaaagtaggatttgattacaacaaca |
212 |
Q |
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| T |
37773349 |
ttaatgggaagcgtgaatttttttagattggtaggaaagtcaatattaaatcagttaaatggggaactagtctaaaacgtaggatttgattacaacaaca |
37773448 |
T |
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| Q |
213 |
aaaaccaaaccttatctagttatcccactaagcggggtcggctatattgatcaaatta |
270 |
Q |
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| T |
37773449 |
acaaccaaaccttatccagttatctcattaagcggggtcggctatatagatcaaatta |
37773506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 41031437 - 41031475
Alignment:
| Q |
232 |
ttatcccactaagcggggtcggctatattgatcaaatta |
270 |
Q |
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| T |
41031437 |
ttatcccactaagtggggtcggctatatggatcaaatta |
41031475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 41031543 - 41031581
Alignment:
| Q |
232 |
ttatcccactaagcggggtcggctatattgatcaaatta |
270 |
Q |
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| T |
41031543 |
ttatcccactaagtggggtcggctatatggatcaaatta |
41031581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 28511819 - 28511856
Alignment:
| Q |
233 |
tatcccactaagcggggtcggctatattgatcaaatta |
270 |
Q |
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| T |
28511819 |
tatcccactaagtggggtcggctacattgatcaaatta |
28511856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 696535 - 696499
Alignment:
| Q |
232 |
ttatcccactaagcggggtcggctatattgatcaaat |
268 |
Q |
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| T |
696535 |
ttatcccactaagtggggtcggctacattgatcaaat |
696499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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