View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_78 (Length: 263)
Name: NF11980_high_78
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_78 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 8958059 - 8957824
Alignment:
| Q |
14 |
gatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8958059 |
gatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcatg |
8957960 |
T |
|
| Q |
114 |
aaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957959 |
aaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaa |
8957860 |
T |
|
| Q |
214 |
aactattttctgaaaagtatatgtttgtaacatttg |
249 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8957859 |
aactattttctgaaaagtatatgtttgtaacatttg |
8957824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 8946009 - 8946129
Alignment:
| Q |
15 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
114 |
Q |
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|||||||||||||| | |||||||||||||||||| || ||||| |||||| |||| |||||| ||||||||||||| ||||||||| || | ||||| |
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| T |
8946009 |
atgtcaggtttcaagacatatggacaactatttgatggtcctctcgaactagaagagtaaacaccaggtgctggtttagttccaaaaattgataacttga |
8946108 |
T |
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| Q |
115 |
aagacatgcttgcttttgaag |
135 |
Q |
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||||||| ||||| |||||| |
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| T |
8946109 |
aagacatatttgctattgaag |
8946129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 8963072 - 8962945
Alignment:
| Q |
15 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
114 |
Q |
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|||||||||||||| | |||||||||||| ||||| |||||||| ||||||||| || || |||||| |||||||| |||||| ||| |||||| |
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| T |
8963072 |
atgtcaggtttcaacacatatggacaactctttgatggccctctagaactataaaaatccaccctaggtactggtttagcaccaaaagatgtaatcttga |
8962973 |
T |
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| Q |
115 |
aagacatgcttgcttttgaagtagagtt |
142 |
Q |
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||||||| || || ||||| ||||||| |
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| T |
8962972 |
aagacattttttctattgaactagagtt |
8962945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 34962792 - 34963018
Alignment:
| Q |
15 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
114 |
Q |
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|||||||||||||| | | |||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
34962792 |
atgtcaggtttcaacacaaatggacaactatatgatggccctcttgaactatatgaatcaacactaggtgctggtttagttccaaaaactgttttcatga |
34962891 |
T |
|
| Q |
115 |
aagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaaa |
214 |
Q |
| |
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||||||||||||| |||||| |||||||| ||||||||||||||||||||| | ||| ||||| ||||||| ||||| ||||| |||||| |
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| T |
34962892 |
aagacatgcttgcaattgaag---------tagagttactactcttgatgtaagctttgacaatttcaccatttattggattaacaaggatggttgcaaa |
34962982 |
T |
|
| Q |
215 |
actattttctgaaaagtatatgtttgtaacatttga |
250 |
Q |
| |
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|||||||| |||| || |||||| || |||||||| |
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| T |
34962983 |
actattttgtgaatagaatatgtctgagacatttga |
34963018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 21687171 - 21687374
Alignment:
| Q |
14 |
gatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttg |
113 |
Q |
| |
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||||||||||||||| | |||||||||||||||||| || || ||||| |||||| || |||||||||| || ||||| || ||| ||||||||||| |
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| T |
21687171 |
gatgtcaggtttcaacacatatggacaactatttgatggtccccttgagctataaaaatccacactaggtgttgatttaacaccgaaagctgttttcttg |
21687270 |
T |
|
| Q |
114 |
aaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaa |
213 |
Q |
| |
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||||||||| ||||| ||||| ||| | |||||||||| |||||||||||||||||| || | ||||||||| | ||||| || ||||||||||| | |
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| T |
21687271 |
aaagacatgtttgctattgaactagcg---ttagagttatgactcttgatgtaagctttcacaatttctccatttactggattaataatgatggatggga |
21687367 |
T |
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| Q |
214 |
aactatt |
220 |
Q |
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||||||| |
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| T |
21687368 |
aactatt |
21687374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 19375885 - 19375998
Alignment:
| Q |
14 |
gatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttg |
113 |
Q |
| |
|
|||||| |||||||| | | |||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||| |||||||||| |
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| T |
19375885 |
gatgtcgggtttcaacacaaatggacaattatttgaaggccctcttgaactataaagatcaacactaggtgttggtttaacaccaaaaattgttttcttg |
19375984 |
T |
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| Q |
114 |
aaagacatgcttgc |
127 |
Q |
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|||||||||||||| |
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| T |
19375985 |
aaagacatgcttgc |
19375998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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