View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_high_81 (Length: 253)
Name: NF11980_high_81
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_81 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26556625 - 26556397
Alignment:
| Q |
1 |
aaagcatttgaaaatacattggcgaattatccggaggacgctgtggatcgatgggtgaaaattgcggctgatgtgcccgggaaaactttagaagagatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26556625 |
aaagcatttgaaaatacattggcgaattatcccgaggacgctgtggatcgatgggagaaaattgcggctgatgtgcccgggaaaactttagaagagatta |
26556526 |
T |
|
| Q |
101 |
aacgtcgctatgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaagagctcaacaacgtg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26556525 |
aacgtcactatgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaagagctcaacaacgtg |
26556426 |
T |
|
| Q |
201 |
tgctggtgaaggaggagctgtgaaaaagg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26556425 |
tgctggtgaaggaggagctgtgaaaaagg |
26556397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 26776056 - 26776234
Alignment:
| Q |
7 |
tttgaaaatacattggcgaattatccggaggacgctgtggatcgatgggtgaaaattgcggctgatgtgcccgggaaaactttagaagagattaaacgtc |
106 |
Q |
| |
|
|||||| || ||||||| |||||||| || || | |||||||||||||| ||| |||||||| | |||||| ||||||||||| ||| | ||||||| || |
|
|
| T |
26776056 |
tttgaatatgcattggccaattatcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaaactttggaacaaattaaacatc |
26776155 |
T |
|
| Q |
107 |
gctatgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaa |
185 |
Q |
| |
|
||||| ||||||| | |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26776156 |
actatgaggttttggtagatgatattcacaacattgaatctggttttgtgcctctaccagattatgattctttttcaaa |
26776234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University