View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_88 (Length: 249)
Name: NF11980_high_88
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_88 |
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| [»] scaffold1521 (1 HSPs) |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 42126193 - 42125993
Alignment:
| Q |
24 |
tgacattagcatgaaagattagtttgaacggaggaattttggtgggatgacacataagaaaattgcaccttaaaatacatgtatgtatgtatgaagaggt |
123 |
Q |
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| T |
42126193 |
tgacattagcattaaagattagtttgaacggaggagttttggtgagatgacacataagaaaattgcaccttaaaatacatgtatgtatg----aagaggt |
42126098 |
T |
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| Q |
124 |
tttttagagtgccacatgggcacaatctaagcataaggttaactcaagtttaaaagtcaacatagtattctaattttaacaaatatacaaattcaaatat |
223 |
Q |
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| T |
42126097 |
tttttagagtgccacataggcacaatctaagcataaggttaactcaagtttaaaagtcaacatagtattctaattttaacaaatatacaaattcaaatat |
42125998 |
T |
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| Q |
224 |
atacg |
228 |
Q |
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||||| |
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| T |
42125997 |
atacg |
42125993 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 3738504 - 3738599
Alignment:
| Q |
12 |
gagaaagccacatgacattagcatgaaagattagtttgaacggaggaattttggtgggatgacacataagaaaattgcaccttaaaatacatgtat |
107 |
Q |
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| T |
3738504 |
gagaaagccacatggcattagcatgaaaaattggttagaaagggagagttttggtgaggtgacacataagcaaagtgtagctcagaatacatgtat |
3738599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1521 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1521
Description:
Target: scaffold1521; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 174 - 130
Alignment:
| Q |
62 |
ttggtgggatgacacataagaaaattgcaccttaaaatacatgta |
106 |
Q |
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| T |
174 |
ttggtgagctgacacataagcaaattgcaccttagaatacatgta |
130 |
T |
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Target: scaffold0152 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 30545 - 30589
Alignment:
| Q |
62 |
ttggtgggatgacacataagaaaattgcaccttaaaatacatgta |
106 |
Q |
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| T |
30545 |
ttggtgagctgacacataagcaaattgcaccttagaatacatgta |
30589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 31336 - 31380
Alignment:
| Q |
62 |
ttggtgggatgacacataagaaaattgcaccttaaaatacatgta |
106 |
Q |
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| T |
31336 |
ttggtgagctgacacataagcaaattgcaccttagaatacatgta |
31380 |
T |
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