View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_high_9 (Length: 612)

Name: NF11980_high_9
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_high_9
NF11980_high_9
[»] chr3 (24 HSPs)
chr3 (18-332)||(45582756-45583088)
chr3 (18-330)||(37022098-37022428)
chr3 (413-574)||(45583200-45583363)
chr3 (471-528)||(37023812-37023869)
chr3 (526-574)||(4066721-4066769)
chr3 (526-574)||(28418372-28418420)
chr3 (526-574)||(33957204-33957252)
chr3 (526-574)||(37964875-37964923)
chr3 (526-574)||(47334420-47334468)
chr3 (528-574)||(22397908-22397954)
chr3 (526-574)||(33955829-33955877)
chr3 (477-527)||(37087111-37087161)
chr3 (477-526)||(45580107-45580156)
chr3 (526-574)||(3344951-3344999)
chr3 (526-574)||(23302298-23302346)
chr3 (526-574)||(23302944-23302992)
chr3 (530-573)||(1003036-1003079)
chr3 (472-527)||(6247382-6247437)
chr3 (530-573)||(26706139-26706182)
chr3 (530-573)||(35350828-35350871)
chr3 (383-413)||(37022002-37022032)
chr3 (383-413)||(45583150-45583180)
chr3 (472-526)||(52986254-52986308)
chr3 (472-525)||(2213922-2213975)
[»] chr8 (25 HSPs)
chr8 (18-332)||(35562987-35563318)
chr8 (223-332)||(14055168-14055277)
chr8 (78-231)||(14054634-14054787)
chr8 (468-526)||(14055453-14055511)
chr8 (526-574)||(6416668-6416716)
chr8 (526-574)||(18385622-18385670)
chr8 (468-526)||(14054117-14054175)
chr8 (526-574)||(9220114-9220162)
chr8 (526-574)||(12501691-12501739)
chr8 (526-574)||(39622121-39622169)
chr8 (468-523)||(35562246-35562301)
chr8 (413-525)||(35563429-35563542)
chr8 (478-526)||(28301659-28301707)
chr8 (526-574)||(29089133-29089181)
chr8 (472-527)||(45021652-45021707)
chr8 (476-526)||(36984145-36984195)
chr8 (472-526)||(39582003-39582057)
chr8 (472-525)||(23753259-23753312)
chr8 (526-574)||(16888801-16888849)
chr8 (478-526)||(28301343-28301391)
chr8 (47-77)||(14054585-14054615)
chr8 (472-526)||(26830324-26830378)
chr8 (472-526)||(26831447-26831501)
chr8 (476-526)||(44296719-44296769)
chr8 (474-526)||(41944354-41944406)
[»] chr7 (15 HSPs)
chr7 (526-574)||(34643827-34643875)
chr7 (526-574)||(42049392-42049440)
chr7 (526-574)||(6612741-6612789)
chr7 (526-574)||(46804850-46804898)
chr7 (472-526)||(7314254-7314308)
chr7 (526-574)||(9179107-9179155)
chr7 (526-574)||(21954185-21954233)
chr7 (478-526)||(46469140-46469188)
chr7 (477-526)||(42337068-42337117)
chr7 (526-570)||(47400772-47400816)
chr7 (472-526)||(16957266-16957320)
chr7 (478-528)||(35960213-35960263)
chr7 (477-526)||(17352889-17352938)
chr7 (472-528)||(40319548-40319604)
chr7 (477-525)||(42338160-42338208)
[»] chr5 (11 HSPs)
chr5 (526-574)||(16478263-16478311)
chr5 (472-527)||(38107138-38107193)
chr5 (468-529)||(4533129-4533190)
chr5 (526-574)||(5812548-5812596)
chr5 (526-574)||(22496972-22497020)
chr5 (526-574)||(39565227-39565275)
chr5 (528-574)||(40830563-40830609)
chr5 (528-574)||(1598674-1598720)
chr5 (477-526)||(2024305-2024354)
chr5 (477-526)||(4534072-4534121)
chr5 (472-528)||(42877086-42877142)
[»] chr4 (18 HSPs)
chr4 (526-574)||(5943950-5943998)
chr4 (472-527)||(10616093-10616148)
chr4 (526-574)||(36353220-36353268)
chr4 (526-574)||(48426020-48426068)
chr4 (471-527)||(2420974-2421030)
chr4 (526-574)||(25887496-25887544)
chr4 (472-525)||(56113760-56113813)
chr4 (472-524)||(6047064-6047116)
chr4 (478-526)||(34155897-34155945)
chr4 (526-574)||(34802138-34802185)
chr4 (530-574)||(48945209-48945253)
chr4 (478-526)||(56112694-56112742)
chr4 (472-527)||(18705398-18705453)
chr4 (478-525)||(49700727-49700774)
chr4 (477-526)||(22813297-22813346)
chr4 (468-527)||(22812631-22812691)
chr4 (526-574)||(27024532-27024580)
chr4 (468-524)||(46170300-46170356)
[»] chr2 (11 HSPs)
chr2 (474-533)||(3627607-3627666)
chr2 (526-574)||(40263510-40263558)
chr2 (526-574)||(4651458-4651506)
chr2 (472-527)||(42700948-42701003)
chr2 (472-526)||(27848335-27848389)
chr2 (526-574)||(3554993-3555041)
chr2 (478-526)||(27849394-27849442)
chr2 (527-574)||(4720878-4720925)
chr2 (527-574)||(6904379-6904426)
chr2 (530-573)||(39122520-39122563)
chr2 (473-525)||(33075186-33075238)
[»] scaffold0009 (1 HSPs)
scaffold0009 (526-574)||(198918-198966)
[»] chr6 (9 HSPs)
chr6 (526-574)||(22510367-22510415)
chr6 (472-529)||(20583013-20583070)
chr6 (475-527)||(15976610-15976662)
chr6 (526-574)||(18903142-18903190)
chr6 (526-574)||(19420113-19420161)
chr6 (472-527)||(15981023-15981078)
chr6 (468-528)||(14456192-14456252)
chr6 (526-574)||(19420681-19420729)
chr6 (472-525)||(20583979-20584032)
[»] chr1 (20 HSPs)
chr1 (526-574)||(18410311-18410359)
chr1 (526-574)||(32523993-32524041)
chr1 (526-574)||(43643190-43643238)
chr1 (526-574)||(2840437-2840485)
chr1 (526-574)||(20274496-20274544)
chr1 (526-574)||(28645798-28645846)
chr1 (526-574)||(38984565-38984613)
chr1 (531-574)||(2023133-2023176)
chr1 (531-574)||(21332871-21332914)
chr1 (531-574)||(45536960-45537003)
chr1 (472-526)||(1531634-1531688)
chr1 (472-538)||(1532578-1532644)
chr1 (472-526)||(16273729-16273783)
chr1 (472-526)||(16276969-16277023)
chr1 (526-568)||(24775545-24775587)
chr1 (529-568)||(15835649-15835688)
chr1 (472-526)||(22778642-22778696)
chr1 (472-526)||(24037902-24037956)
chr1 (472-524)||(29183460-29183512)
chr1 (528-572)||(49004970-49005013)
[»] scaffold0368 (1 HSPs)
scaffold0368 (527-574)||(9932-9979)
[»] scaffold0446 (1 HSPs)
scaffold0446 (478-526)||(11560-11608)
[»] scaffold0492 (1 HSPs)
scaffold0492 (529-568)||(12369-12408)
[»] scaffold0008 (1 HSPs)
scaffold0008 (472-526)||(268410-268464)
[»] scaffold1212 (1 HSPs)
scaffold1212 (477-526)||(2134-2183)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 45582756 - 45583088
Alignment:
Q  18 tgggagatgtatttgatagggattgaatacaaattttgtttcctaaaaaacgtgatgttgttgttg------------------atgggaacttgaattc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||    
T  45582756 tgggagatgtatttgatagggattgaatacaaattttgtttcctaaaaaacgtgatgttgttgttggtggttttcatcttgttgatgggaacttgaattc 45582855  T
Q  100 attgttgcaatagatgagattgggaaggaaaatatatgacnnnnnnnnnnnnnnnnnttgcttatggtttctcgctgttgaagaaggaaaaagggcaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||    
T  45582856 attgttgcaatagatgagattgggaaggaaaatatatgacaaaaaaagaagaaaaagttgcttatggtttctcgctgttgaagaaggaaaaagggcaaat 45582955  T
Q  200 gttatagaatttcctaattattgaaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagtt 299  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45582956 gttatagaatttcctaataattgaaaaagaaatgttatgaaaattttgagaaggataccatgaacatattttttgaatgaagatgaatgataatgtagtt 45583055  T
Q  300 gctgctattgccgtgcttggttctccctcttcc 332  Q
    |||||||||| ||||||||||||||||||||||    
T  45583056 gctgctattgtcgtgcttggttctccctcttcc 45583088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 37022428 - 37022098
Alignment:
Q  18 tgggagatgtatttgatagggattgaatacaaattttgtttcctaaaaaacgtgatgttgttgttgatgg------------------gaacttgaattc 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||                  |||||||||||     
T  37022428 tgggagatgtatttgatagggattgaatacaaattttgttttctaaaaaacgtgatgttgttgttggtggttttcatcttgttgatgagaacttgaatta 37022329  T
Q  100 attgttgcaatagatgagattgggaaggaaaatatatgacnnnnnnnnnnnnnnnnnttgcttatggtttctcgctgttgaagaaggaaaaagggcaaat 199  Q
    |||||||||||||||| |||||||||||||||||||||||                 |||||||||||||||||||||||||||| ||||||||||||||    
T  37022328 attgttgcaatagatgcgattgggaaggaaaatatatgacaaaaaaagaagaaaaagttgcttatggtttctcgctgttgaagaaagaaaaagggcaaat 37022229  T
Q  200 gttatagaatttcctaattattgaaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagtt 299  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  37022228 gttatagaatttcctaattattgaaaaagaaatgtaatgaaaattttgagaatgataccatgaacatattatttgaatggagatgaatgataatgtagtt 37022129  T
Q  300 gctgctattgccgtgcttggttctccctctt 330  Q
    |||| |||| | |||||||||||||||||||    
T  37022128 gctgttattcctgtgcttggttctccctctt 37022098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 413 - 574
Target Start/End: Original strand, 45583200 - 45583363
Alignment:
Q  413 aaattgatggtttacaaaagggttagacatagg-ggtcactattaccannnnnnnnaataggggtc-aaaattgcaatttttgcaaacttaggaggtaga 510  Q
    ||||||| | |||||||||||| |||||||||| ||||||| ||||||        |||||||| | |||||||||| ||||||||||||||| | ||||    
T  45583200 aaattgacgttttacaaaaggggtagacataggaggtcacttttaccattttttttaatagggggccaaaattgcaacttttgcaaacttaggggttaga 45583299  T
Q  511 aagtgtgtttaagccttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45583300 aagtgtgtttaagccttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 45583363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 37023812 - 37023869
Alignment:
Q  471 aggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  37023812 aggggccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcctta 37023869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 4066721 - 4066769
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  4066721 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 4066769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 28418372 - 28418420
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  28418372 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 28418420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 33957204 - 33957252
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  33957204 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 33957252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 37964923 - 37964875
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  37964923 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 37964875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 47334420 - 47334468
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  47334420 ttataattattaagtttgtattaaaaattgggagaaatttttggaacaa 47334468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 528 - 574
Target Start/End: Complemental strand, 22397954 - 22397908
Alignment:
Q  528 ataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  22397954 ataattattaagcttgtattaaaaattaggagaaatttttggaacaa 22397908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 33955829 - 33955877
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||||||    
T  33955829 ttataattaataagcttgtattaaaaattaggagaaatttttggaacaa 33955877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 527
Target Start/End: Complemental strand, 37087161 - 37087111
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  37087161 caaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctt 37087111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 45580156 - 45580107
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| |||||||||||||||  ||| |||||||||||||||||    
T  45580156 caaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagcct 45580107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 3344951 - 3344999
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||| ||||  ||||||||||||||||    
T  3344951 ttataattattaagcttgtattaaaatttaggggaaatttttggaacaa 3344999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 23302346 - 23302298
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| || |||||| |||||| |||||||||||||||||    
T  23302346 ttataattattaagcttttattaacaattaggagaaatttttggaacaa 23302298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 23302992 - 23302944
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||| ||||| |||||| |||||||||||||||||    
T  23302992 ttataattattaagcttgcattaataattaggagaaatttttggaacaa 23302944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 1003036 - 1003079
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaaca 573  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||    
T  1003036 aattattaagcttgtattaaaaattaggagaaattttgggaaca 1003079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 6247437 - 6247382
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||||||||||| ||||||||||||||| || | |||||| |||| ||||||    
T  6247437 ggggtcaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcctt 6247382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 26706139 - 26706182
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaaca 573  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||    
T  26706139 aattattaagcttgtattaaaaattaggagaaattttgggaaca 26706182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 35350828 - 35350871
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaaca 573  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||    
T  35350828 aattattaagcttgtattaaaaattaggagaaattttgggaaca 35350871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 413
Target Start/End: Complemental strand, 37022032 - 37022002
Alignment:
Q  383 ttaaataactaattacacatgtggcatgcca 413  Q
    |||||||||||||||||||||||||||||||    
T  37022032 ttaaataactaattacacatgtggcatgcca 37022002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 413
Target Start/End: Original strand, 45583150 - 45583180
Alignment:
Q  383 ttaaataactaattacacatgtggcatgcca 413  Q
    |||||||||||||||||||||||||||||||    
T  45583150 ttaaataactaattacacatgtggcatgcca 45583180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 52986254 - 52986308
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||||| || |||| ||||||||||  ||| |||||||||||||||||    
T  52986254 ggggtcaaaattgtaacttttacaaacttagggagtaaaaagtgtgtttaagcct 52986308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 2213975 - 2213922
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||||||||||||||| ||||| ||||||||| |||  |||||| |||||||||    
T  2213975 ggggtcaaaattgcaacttttgaaaacttagggggtcaaaagtgggtttaagcc 2213922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 35562987 - 35563318
Alignment:
Q  18 tgggagatgtatttgatagggattgaatacaaattttgtttcctaaaaaacgtgatgttgttgttgatgg------------------gaacttgaattc 99  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||                  ||||||||||||    
T  35562987 tgggagatgtatttgatagggattgaatacaaatattgtttcttaaaaaacgtgatgttgttgttggtggttttcatcttgctgttgggaacttgaattc 35563086  T
Q  100 attgttgcaatagatgagattgggaaggaaaatatatgacnnnnnnnnnnnnnnnnnttgcttatggtttctcgctgttgaagaaggaaaaagggcaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||||                 ||| |||||||||||||||||||||||||||||||||||||||    
T  35563087 attgttgcaatagatgagattgggaaggaaaatatatgacaaaaaaagaagaaaaagttgtttatggtttctcgctgttgaagaaggaaaaagggcaaat 35563186  T
Q  200 gttatagaatttcctaattattgaaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagtt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35563187 gttatagaatttcctaattattgaaaaagaaatgttatgaaaattttgagaatgataccatgaacata-tttttgaatgaagatgaatgataatgtagtt 35563285  T
Q  300 gctgctattgccgtgcttggttctccctcttcc 332  Q
    |||||||||||||||||||||||||||||||||    
T  35563286 gctgctattgccgtgcttggttctccctcttcc 35563318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 14055168 - 14055277
Alignment:
Q  223 aaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagttgctgctattgccgtgcttggttc 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14055168 aaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagttgctcctattgccgtgcttggttc 14055267  T
Q  323 tccctcttcc 332  Q
    ||||||||||    
T  14055268 tccctcttcc 14055277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 14054634 - 14054787
Alignment:
Q  78 ttgttgatgggaacttgaattcattgttgcaatagatgagattgggaaggaaaatatatgacnnnnnnnnnnnnnnnnnttgcttatggtttctcgctgt 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||| |||||    
T  14054634 ttgttgatgggaacttgaattcattgttgcaatagatgagattgggaaggaaaatatatgacaaaaaaagaaggaaaagttgcttatggtttcttgctgt 14054733  T
Q  178 tgaagaaggaaaaagggcaaatgttatagaatttcctaattattgaaaaagaaa 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14054734 tgaagaaggaaaaagggcaaatgttatagaatttcctaattattgaaaaagaaa 14054787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 468 - 526
Target Start/End: Original strand, 14055453 - 14055511
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  14055453 aataggggccaaaattgcaacttttgcaaacttagggggtagaaagtgtgtttaagcct 14055511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 6416716 - 6416668
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6416716 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaa 6416668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 18385622 - 18385670
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18385622 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaa 18385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 468 - 526
Target Start/End: Complemental strand, 14054175 - 14054117
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  14054175 aataggagccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcct 14054117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 9220162 - 9220114
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  9220162 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 9220114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 12501691 - 12501739
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  12501691 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 12501739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 39622121 - 39622169
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  39622121 ttataattattaagtttgtattaaaaattaggagaaacttttggaacaa 39622169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 523
Target Start/End: Complemental strand, 35562301 - 35562246
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaag 523  Q
    |||||||||||||||||||| ||||||||||||||  |||| ||||||||||||||    
T  35562301 aataggggtcaaaattgcaacttttgcaaacttagagggtaaaaagtgtgtttaag 35562246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 525
Target Start/End: Original strand, 35563429 - 35563542
Alignment:
Q  413 aaattgatggtttacaaaagggttagacataggggtcactattaccannnnnnnnaataggg-gtcaaaattgcaatttttgcaaacttaggaggtagaa 511  Q
    ||||||| | |||||||||||| ||||||||||||||||| ||||||        ||||||| |  |||||||||| |||||||||||||||  ||||||    
T  35563429 aaattgacgttttacaaaaggggtagacataggggtcacttttaccattttttttaatagggagctaaaattgcaacttttgcaaacttagggagtagaa 35563528  T
Q  512 agtgtgtttaagcc 525  Q
    | || |||||||||    
T  35563529 aatgcgtttaagcc 35563542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 28301659 - 28301707
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  28301659 aaaattgcaacttttgcaaacttaggaggtaaaaagtgcgtttaagcct 28301707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 29089133 - 29089181
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  29089133 ttataattattaagcttgtattaacaattaggagaaatttttggaacaa 29089181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 45021652 - 45021707
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||||||||||| |||| |||||||||| |||| |||||| |||||||||||    
T  45021652 ggggtcaaaattgcaacttttacaaacttagggggtaaaaagtgagtttaagcctt 45021707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 36984195 - 36984145
Alignment:
Q  476 tcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||| |||||||||||||| ||||| |||||| ||||||||||    
T  36984195 tcaaaattgcaacttttgcaaacttagtaggtaaaaagtgcgtttaagcct 36984145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 39582003 - 39582057
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| |||||||||||||||  ||| |||||||||||||||||    
T  39582003 ggggccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagcct 39582057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 23753312 - 23753259
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||| ||||||||||| |||| |||||||||| |||| ||||||||||||||||    
T  23753312 ggggccaaaattgcaacttttacaaacttagggggtaaaaagtgtgtttaagcc 23753259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 16888801 - 16888849
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||| |||||| |||| ||||||||||||    
T  16888801 ttataattattaagcttgtattaacaattaggagaattttttggaacaa 16888849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 28301391 - 28301343
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| |||| ||||| ||||||||| |||||||||||||||||    
T  28301391 aaaattgcaactttttcaaacataggaggtaaaaagtgtgtttaagcct 28301343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 14054585 - 14054615
Alignment:
Q  47 caaattttgtttcctaaaaaacgtgatgttg 77  Q
    |||||||||||||||||||||||||||||||    
T  14054585 caaattttgtttcctaaaaaacgtgatgttg 14054615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 26830378 - 26830324
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||| |  ||||||||| |||| |||| |||||||||||||||||    
T  26830378 ggggtcaaaattgctacgtttgcaaacctagggggtaaaaagtgtgtttaagcct 26830324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 26831447 - 26831501
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||| | | ||||||||||||||| |||| |||||||||||||||||    
T  26831447 ggggccaaaattactacttttgcaaacttagggggtaaaaagtgtgtttaagcct 26831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 44296769 - 44296719
Alignment:
Q  476 tcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||| ||||||||||||| | |||| |||||| ||||||||||    
T  44296769 tcaaaattgcaacttttgcaaacttaaggggtaaaaagtgcgtttaagcct 44296719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 41944406 - 41944354
Alignment:
Q  474 ggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||| ||||||||||||||  |||| ||||||  |||||||||    
T  41944406 ggtcaaaattgcaacttttgcaaacttagagggtaaaaagtgaatttaagcct 41944354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 34643827 - 34643875
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34643827 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaa 34643875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 42049440 - 42049392
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42049440 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaa 42049392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 6612789 - 6612741
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  6612789 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 6612741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 46804898 - 46804850
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  46804898 ttataattattaagtttgtattaaaaattaggagaaacttttggaacaa 46804850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 7314254 - 7314308
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  7314254 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgtgtttaagcct 7314308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 9179107 - 9179155
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||    
T  9179107 ttataattattaagcttgtattaaaaattatgagaaatttttggaacaa 9179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 21954185 - 21954233
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  21954185 ttataattattaagcttgtattaaaaattaggagaattttttggaacaa 21954233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 46469188 - 46469140
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  46469188 aaaattgcaacttttgcaaacttaaggggtagaaagtgtgtttaagcct 46469140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 42337117 - 42337068
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  42337117 caaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 42337068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 570
Target Start/End: Original strand, 47400772 - 47400816
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttgga 570  Q
    ||||||||||||||||| |||||| |||||| |||||||||||||    
T  47400772 ttataattattaagtttatattaacaattaggagaaatttttgga 47400816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 16957266 - 16957320
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||| |||||    
T  16957266 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagcct 16957320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 528
Target Start/End: Original strand, 35960213 - 35960263
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    |||||||||| ||||||||| ||||| |||| |||||| ||||||||||||    
T  35960213 aaaattgcaacttttgcaaaattagggggtaaaaagtgggtttaagcctta 35960263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 17352938 - 17352889
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||| ||| ||||||||||||||| | || |||||||||||||||||    
T  17352938 caaaattacaacttttgcaaacttaggggataaaaagtgtgtttaagcct 17352889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 40319604 - 40319548
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    |||| ||||||||||| ||||||||| ||||  |||| |||||| ||||||||||||    
T  40319604 ggggccaaaattgcaacttttgcaaagttagagggtaaaaagtgcgtttaagcctta 40319548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 525
Target Start/End: Original strand, 42338160 - 42338208
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    ||||||||||| ||||||||||||||| || | |||||| |||||||||    
T  42338160 caaaattgcaacttttgcaaacttagggggcaaaaagtgagtttaagcc 42338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 16478311 - 16478263
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16478311 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaa 16478263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 38107193 - 38107138
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  38107193 ggggtcaaaattgcaatttttgcaaacttaggaggtaaaaagtggatttaagcctt 38107138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 468 - 529
Target Start/End: Complemental strand, 4533190 - 4533129
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagccttat 529  Q
    |||||||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||||||    
T  4533190 aataggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccttat 4533129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 5812548 - 5812596
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  5812548 ttataattattaagtttgtattaaaaattaggagaaacttttggaacaa 5812596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 22496972 - 22497020
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  22496972 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 22497020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 39565227 - 39565275
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  39565227 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 39565275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 528 - 574
Target Start/End: Complemental strand, 40830609 - 40830563
Alignment:
Q  528 ataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  40830609 ataattattaagcttgtattaaaaattaggagaaatttttggaacaa 40830563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 574
Target Start/End: Original strand, 1598674 - 1598720
Alignment:
Q  528 ataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||||    
T  1598674 ataataattaagcttgtattaaaaattaggagaaatttttggaacaa 1598720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 2024305 - 2024354
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  2024305 caaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaagcct 2024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 4534072 - 4534121
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||||| |||| ||||||  |||||||||    
T  4534072 caaaattgcaacttttgcaaacttagggggtaaaaagtgaatttaagcct 4534121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 42877086 - 42877142
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    |||||||||||| ||| ||||||||||||| |||| | |||||| |||| |||||||    
T  42877086 ggggtcaaaattacaacttttgcaaacttaagaggcaaaaagtgcgttttagcctta 42877142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 5943998 - 5943950
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5943998 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaa 5943950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 10616093 - 10616148
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  10616093 ggggtcaaaattgcaacttttgcaaatttagggggtagaaagtgtgtttaagcctt 10616148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 36353220 - 36353268
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  36353220 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 36353268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 48426068 - 48426020
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  48426068 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 48426020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 527
Target Start/End: Original strand, 2420974 - 2421030
Alignment:
Q  471 aggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||| |||||||||| |||||||||||||   |||||||||||||||||||||||    
T  2420974 aggggttaaaattgcaacttttgcaaacttaaagggtagaaagtgtgtttaagcctt 2421030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 25887544 - 25887496
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  25887544 ttataattattaagcttgtattaacaattaggagaaatttttggaacaa 25887496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 56113760 - 56113813
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||    
T  56113760 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcc 56113813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 524
Target Start/End: Complemental strand, 6047116 - 6047064
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagc 524  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| ||||||||    
T  6047116 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaagc 6047064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 34155945 - 34155897
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| ||||| ||||||||| |||| |||||||||||||||||    
T  34155945 aaaattgcaacttttgtaaacttagggggtaaaaagtgtgtttaagcct 34155897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 34802185 - 34802138
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  34802185 ttataattattaagcttgtattaaaa-ttaggagaaatttttggaacaa 34802138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 574
Target Start/End: Complemental strand, 48945253 - 48945209
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||| |||||||||||||||| || ||||||||||||||    
T  48945253 aattattaaggttgtattaaaaattaggaggaatttttggaacaa 48945209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 56112742 - 56112694
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  56112742 aaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 56112694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 18705398 - 18705453
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||||||||| | ||||||||||||||| |||| | |||| |||||||||||    
T  18705398 ggggtcaaaattgctacttttgcaaacttagggggtaaatagtgcgtttaagcctt 18705453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 525
Target Start/End: Original strand, 49700727 - 49700774
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||||||||| |||||||||| |||| |||| ||||||||||||||||    
T  49700727 aaaattgcaacttttgcaaacatagggggtaaaaagtgtgtttaagcc 49700774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 22813297 - 22813346
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||| |||||  |||||| ||||||||||    
T  22813297 caaaattgcaacttttgcaaacttaagaggtcaaaagtgggtttaagcct 22813346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 527
Target Start/End: Complemental strand, 22812691 - 22812631
Alignment:
Q  468 aatagggg-tcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||| |||||||||||| ||||||||||||| | |||  |||||| |||||||||||    
T  22812691 aataggggatcaaaattgcaacttttgcaaacttaaggggtcaaaagtgggtttaagcctt 22812631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 27024532 - 27024580
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||| |||||| | |||| ||||||||||||    
T  27024532 ttataattattaagcttgtattgaaaatttggagaattttttggaacaa 27024580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 524
Target Start/End: Complemental strand, 46170356 - 46170300
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagc 524  Q
    |||||||  ||||||||||| ||  |||||||||||||||| |||||| ||||||||    
T  46170356 aatagggaccaaaattgcaacttccgcaaacttaggaggtaaaaagtgggtttaagc 46170300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 3627666 - 3627607
Alignment:
Q  474 ggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagccttataatt 533  Q
    |||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||    
T  3627666 ggtcaaaattgcaacttttgcaaacttaaggggtaaaaagtgtgtttaagccttataatt 3627607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 40263558 - 40263510
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  40263558 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 40263510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 4651458 - 4651506
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  4651458 ttataattattaagcttgtattaaaaattaggagaaatctttggaacaa 4651506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 42701003 - 42700948
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    ||||||||||||||||  |||||||||||||| |||| ||||| ||||||||||||    
T  42701003 ggggtcaaaattgcaacctttgcaaacttagggggtaaaaagtttgtttaagcctt 42700948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 27848389 - 27848335
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  27848389 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 27848335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 3554993 - 3555041
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||| |||||| |||| ||||||||||||    
T  3554993 ttataattattaagcttgtattaacaattaggagaattttttggaacaa 3555041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 27849394 - 27849442
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| |||| ||||||||||||||| |||||| ||||||||||    
T  27849394 aaaattgcaacttttacaaacttaggaggtaaaaagtgagtttaagcct 27849442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 574
Target Start/End: Original strand, 4720878 - 4720925
Alignment:
Q  527 tataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||| |||||||||||||||| || |||||||| |||||    
T  4720878 tataattattaagcttgtattaaaaattaggaggaatttttgaaacaa 4720925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 574
Target Start/End: Complemental strand, 6904426 - 6904379
Alignment:
Q  527 tataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||| |||||||||||||||| || |||||||| |||||    
T  6904426 tataattattaagcttgtattaaaaattaggaggaatttttgaaacaa 6904379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 39122520 - 39122563
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaaca 573  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||    
T  39122520 aattattaagcttgtattaaaaattaggagaaattttgggaaca 39122563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 525
Target Start/End: Complemental strand, 33075238 - 33075186
Alignment:
Q  473 gggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    ||||||||||| ||| |||| ||||||||||||||| |||||  |||||||||    
T  33075238 gggtcaaaattacaacttttacaaacttaggaggtaaaaagtaagtttaagcc 33075186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 198918 - 198966
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  198918 ttataattattaagcttgtattaaaaattagaagaattttttggaacaa 198966  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 22510415 - 22510367
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  22510415 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 22510367  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 20583070 - 20583013
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagccttat 529  Q
    |||||||||||||||| |||| |||||||||| | || ||||||||||||||||||||    
T  20583070 ggggtcaaaattgcaacttttccaaacttaggggataaaaagtgtgtttaagccttat 20583013  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 527
Target Start/End: Complemental strand, 15976662 - 15976610
Alignment:
Q  475 gtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    ||||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  15976662 gtcaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctt 15976610  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 18903142 - 18903190
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  18903142 ttataattattaaacttgtattaaaaattagaagaagtttttggaacaa 18903190  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 19420113 - 19420161
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  19420113 ttataattattaagcttgtattaataattaggagaaatttttggaacaa 19420161  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 15981023 - 15981078
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  15981023 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctt 15981078  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 528
Target Start/End: Original strand, 14456192 - 14456252
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    |||||||| |||||||| || |||||||||||| || |||| |||||| ||||||||||||    
T  14456192 aataggggccaaaattgtaacttttgcaaactttgggggtaaaaagtgcgtttaagcctta 14456252  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 19420729 - 19420681
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||| ||||||||| ||| |||||||||||| |||||||||||||||||    
T  19420729 ttattattattaagcttgcattaaaaattaggagaaatttttggaacaa 19420681  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 20583979 - 20584032
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||||||||||||||| ||||||||||||||  |||| |||||  |||||||||    
T  20583979 ggggtcaaaattgcaacttttgcaaacttagagggtaaaaagtacgtttaagcc 20584032  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 18410359 - 18410311
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  18410359 ttataattattaagcttgtattaaaaattagaagaagtttttggaacaa 18410311  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 32523993 - 32524041
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  32523993 ttataattattaagcttgtattaaaaattagaagaagtttttggaacaa 32524041  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 43643190 - 43643238
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  43643190 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 43643238  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 2840485 - 2840437
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  2840485 ttataattattaagcttgtattaaaaattaggagaaatatttggaacaa 2840437  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 20274544 - 20274496
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  20274544 ttataattattaagcttgtattaacaattaggagaaatttttggaacaa 20274496  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 28645798 - 28645846
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  28645798 ttataattattaagtttgtattaaaaattaggagaaacttttgtaacaa 28645846  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 38984565 - 38984613
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  38984565 ttataattattaagcttgtattaaaaattaggagaaatctttggaacaa 38984613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 574
Target Start/End: Complemental strand, 2023176 - 2023133
Alignment:
Q  531 attattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  2023176 attattaagcttgtattaaaaattaggagaaatttttggaacaa 2023133  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 574
Target Start/End: Original strand, 21332871 - 21332914
Alignment:
Q  531 attattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  21332871 attattaagcttgtattaaaaattaggagaaatttttggaacaa 21332914  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 574
Target Start/End: Complemental strand, 45537003 - 45536960
Alignment:
Q  531 attattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  45537003 attattaagcttgtattaaaaattaggagaaatttttggaacaa 45536960  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 1531688 - 1531634
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||||| |||||||||||||||  ||| |||||| ||||||||||    
T  1531688 ggggtcaaaattgcaacttttgcaaacttagggagtaaaaagtgagtttaagcct 1531634  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 538
Target Start/End: Original strand, 1532578 - 1532644
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagccttataattattaa 538  Q
    |||| ||||||||||| || |||||||||||| |||| |||||| ||||||||||| ||| ||||||    
T  1532578 ggggccaaaattgcaacttctgcaaacttagggggtaaaaagtgggtttaagccttttaaatattaa 1532644  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 16273783 - 16273729
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||||| ||||||||||||| | |||| |||||| ||||||||||    
T  16273783 ggggtcaaaattgcaacttttgcaaacttatggggtaaaaagtgagtttaagcct 16273729  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 16276969 - 16277023
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  16276969 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 16277023  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 568
Target Start/End: Complemental strand, 24775587 - 24775545
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttg 568  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  24775587 ttataattattaagcttgtattaaaaattaggagaaatttttg 24775545  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 15835649 - 15835688
Alignment:
Q  529 taattattaagtttgtattaaaaattagaagaaatttttg 568  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  15835649 taattattaagtatgtattaaaaattaggagaaatttttg 15835688  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 22778642 - 22778696
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| ||||||  |||||||||    
T  22778642 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtggatttaagcct 22778696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 24037956 - 24037902
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||||| ||||||||||||| | | || |||||| ||||||||||    
T  24037956 ggggtcaaaattgcaacttttgcaaacttaagggataaaaagtgagtttaagcct 24037902  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 524
Target Start/End: Original strand, 29183460 - 29183512
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagc 524  Q
    |||| ||||||||||| |||| |||||||||  |||| |||||||||||||||    
T  29183460 ggggccaaaattgcaactttttcaaacttagagggtaaaaagtgtgtttaagc 29183512  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 572
Target Start/End: Complemental strand, 49005013 - 49004970
Alignment:
Q  528 ataattattaagtttgtattaaaaattagaagaaatttttggaac 572  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||    
T  49005013 ataattattaagcttgtattaaaa-ttaggagaaatttttggaac 49004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 574
Target Start/End: Original strand, 9932 - 9979
Alignment:
Q  527 tataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||| |||||||||||||||| || ||||||||||||||    
T  9932 tataattattaagcttgtattaaaaattaggaggaatttttggaacaa 9979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 11608 - 11560
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  11608 aaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 11560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 12369 - 12408
Alignment:
Q  529 taattattaagtttgtattaaaaattagaagaaatttttg 568  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  12369 taattattaagtatgtattaaaaattaggagaaatttttg 12408  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 268464 - 268410
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||| |||||| |||||| |||| |||||    
T  268464 ggggccaaaattgcaacttttgcaaacttaagaggtaaaaagtgcgttttagcct 268410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 2183 - 2134
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||||| |||| |||||| |||| |||||    
T  2183 caaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagcct 2134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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