View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_91 (Length: 246)
Name: NF11980_high_91
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_91 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 32062733 - 32062496
Alignment:
| Q |
1 |
cactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatcnnnnnnnccgaacaaaatctattggcttacctccttgtttctgttt |
100 |
Q |
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| T |
32062733 |
cactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccgaacaaaatctattggcttacctccttgtttctgttt |
32062634 |
T |
|
| Q |
101 |
gaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
32062633 |
gaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccggtgcattctcttgcttcagtgaccttttctttcta |
32062534 |
T |
|
| Q |
201 |
acaaagtctattggcttcccaaacatgttgttgatgtc |
238 |
Q |
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| T |
32062533 |
acaaagtctattggcttcccaaacatgttgtttatgtc |
32062496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 32062758 - 32062652
Alignment:
| Q |
111 |
tcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtcta |
210 |
Q |
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|||||||| ||||| || |||||||||| || |||||||||||| |||||| || |||| ||||| ||||||| | | ||||| || | |||||| |||| |
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| T |
32062758 |
tcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccgaacaaaatcta |
32062659 |
T |
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| Q |
211 |
ttggctt |
217 |
Q |
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| T |
32062658 |
ttggctt |
32062652 |
T |
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