View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_97 (Length: 240)
Name: NF11980_high_97
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_97 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 53240022 - 53240244
Alignment:
| Q |
18 |
gaaggaatacattttaagagatgagcatgtaactaaacaatgggatagtttgaattttgtgttgcaacttcgatttatggtaacacacattcaaagaggg |
117 |
Q |
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| T |
53240022 |
gaaggaatacattttaagagatgagcatgtaactaaacaatgggatagtttgaattttgtgttgcaacttcgatttatggtaacacacattcaaagaggg |
53240121 |
T |
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| Q |
118 |
aaaatgacatagccctctacttatacattgcacataccatacgaatttgtactcatacaactcaattgggccaaataaattgggcaattaaaagtttacc |
217 |
Q |
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| T |
53240122 |
aaaatgacagagtcctctacttatacattgcacatactatacgaatttgtactcatacaactcaattgggccaaataaattgggcaattaaaagtttact |
53240221 |
T |
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| Q |
218 |
tgtaattcaacagtttcaacttt |
240 |
Q |
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|||||||||| |||||||||||| |
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| T |
53240222 |
tgtaattcaaaagtttcaacttt |
53240244 |
T |
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