View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_low_104 (Length: 240)
Name: NF11980_low_104
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_104 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17402251 - 17402473
Alignment:
| Q |
1 |
tttattaaaaagttgcttgtaatttggaataatgtcacggatccacgttgagatgtcgtcagcacaataattaagcttctaaataatatcggatgaaggg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17402251 |
tttattaataagttgcttgtaatttggaataatgtcacggatccacgttgagatgtcgtcagcacaataattaagcttctaaataatatcggatgaaggg |
17402350 |
T |
|
| Q |
101 |
taatggtcccaattactcgacaaggtgaataagttcgggttcaaggagccaataattgttgaaacggaaattgcagtgaggctgcctccatgggacgggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
17402351 |
taatggtcccaattactcgacaaggtgaataagttctggttcaaggagccaataattgttgaaacggaaattgcggtggggctgcctccatgggacgggg |
17402450 |
T |
|
| Q |
201 |
tcaagttggaataacaacgaggt |
223 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
17402451 |
tcaagtttgaataacaacgaggt |
17402473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University