View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_106 (Length: 239)
Name: NF11980_low_106
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_106 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 47192341 - 47192564
Alignment:
| Q |
1 |
gatgcaggaagatcaacttataatgttactaaaatcgcgctactcgattcctttggccatttcatgtcctctgatgcataccaatttttcaccattgatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47192341 |
gatgcaggaagatcaacttataatgttactaaaatcgcgctactcgattcctttggccatttcatgtcctctgatgcataccaatttgtcaccattgatt |
47192440 |
T |
|
| Q |
101 |
atccaaagaaacttcatagattactcaaaatggatcatgatggtaacccacgtgtttatagcttcagtgataaaactaagacatgggaagtttcatggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47192441 |
atccaaagaaacttcatagattactcaaaatggatcatgatggtaacccacgtgtttatagcttcaatgataaaactaagacatgggaagtttcatggca |
47192540 |
T |
|
| Q |
201 |
agctattgctgaaccatgtgaggt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
47192541 |
agctattgctgaaccatgtgaggt |
47192564 |
T |
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