View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_111 (Length: 238)
Name: NF11980_low_111
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_111 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 9026834 - 9027032
Alignment:
| Q |
25 |
gtcaaaatgatttttaattaagaatcgagctaaactgagtcttgtagttttagtcaaaaattaaaatggttgttctctcttgttatatataataactttt |
124 |
Q |
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| T |
9026834 |
gtcaaaatgatttttaattaagaatcgagctaaactgagtcttgtagttttagtcaaaaattaaaatggttgttctctcttgttatatataataactttt |
9026933 |
T |
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| Q |
125 |
aaccagaaccaagttattattctaaagttgtaagtacatctaaagcatcctcttcttctttctcaatagtctatcatttcaaacattgaatgtaacaat |
223 |
Q |
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| T |
9026934 |
aaccagaaccaagttattattctaaagttgtaagtacatctaaagcatcctcttcttctttctcaatagtctatcatttcaaacattgaatgtaacaat |
9027032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 9002901 - 9002862
Alignment:
| Q |
145 |
tctaaagttgtaagtacatctaaagcatcctcttcttctt |
184 |
Q |
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|||||||||| |||||||||||||| |||||||||||||| |
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| T |
9002901 |
tctaaagttgaaagtacatctaaagaatcctcttcttctt |
9002862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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