View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_114 (Length: 237)

Name: NF11980_low_114
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_114
NF11980_low_114
[»] chr7 (2 HSPs)
chr7 (1-96)||(27324527-27324622)
chr7 (45-89)||(40186794-40186838)
[»] chr6 (1 HSPs)
chr6 (5-96)||(3500765-3500856)
[»] chr4 (2 HSPs)
chr4 (1-96)||(28359322-28359417)
chr4 (44-86)||(50344859-50344901)
[»] chr5 (1 HSPs)
chr5 (38-89)||(27771336-27771387)
[»] chr2 (1 HSPs)
chr2 (37-96)||(5609207-5609266)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 27324527 - 27324622
Alignment:
Q  1 tcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgtaacttgatatttt 96  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  27324527 tcacgtaccattcataagagtgggaaggaaatgagtaaggataattttggtattatgaataaattttaattgaatttgggtgtaacttgatatttt 27324622  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 40186794 - 40186838
Alignment:
Q  45 ttttggtattatgaataaattttaattaaatttggatgtaacttg 89  Q
    |||||||||||| |  ||||||||| |||||||||||||||||||    
T  40186794 ttttggtattattataaaattttaaataaatttggatgtaacttg 40186838  T

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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 3500765 - 3500856
Alignment:
Q  5 gtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgtaacttgatatttt 96  Q
    ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  3500765 gtatcattcataagagtgggaaggaaatgagtaaggataattttgttattatgaataaattttaattgaatttgggtgtaacttgatatttt 3500856  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 28359322 - 28359417
Alignment:
Q  1 tcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgtaacttgatatttt 96  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||    
T  28359322 tcacgtatcattcataagagtgggaaggaaatgagtaaggataattttgatattatgaataaattttaaatgaatttgggtgtaacttgatatttt 28359417  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 50344859 - 50344901
Alignment:
Q  44 attttggtattatgaataaattttaattaaatttggatgtaac 86  Q
    |||||||||||||| || ||||||||||||| |||||||||||    
T  50344859 attttggtattatggattaattttaattaaaattggatgtaac 50344901  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 27771336 - 27771387
Alignment:
Q  38 atgataattttggtattatgaataaattttaattaaatttggatgtaacttg 89  Q
    |||| ||||||||||||||   |||||||||| |||||||||||||||||||    
T  27771336 atgacaattttggtattattgttaaattttaaataaatttggatgtaacttg 27771387  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 5609207 - 5609266
Alignment:
Q  37 aatgataattttggtattatgaataaattttaattaaatttggatgtaacttgatatttt 96  Q
    ||||| |||||  ||||||| |||||||||||||||| ||||||||||||  ||||||||    
T  5609207 aatgacaatttcagtattattaataaattttaattaactttggatgtaacaagatatttt 5609266  T

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