View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_low_116 (Length: 233)
Name: NF11980_low_116
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_116 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 14725546 - 14725747
Alignment:
| Q |
13 |
agcacagaacaacaaaatcaaattnnnnnnngaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14725546 |
agcacagaacaacaaaatcaaattaaaaaaagaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa |
14725645 |
T |
|
| Q |
113 |
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14725646 |
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca |
14725745 |
T |
|
| Q |
213 |
cg |
214 |
Q |
| |
|
|| |
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|
| T |
14725746 |
cg |
14725747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 17597964 - 17597763
Alignment:
| Q |
13 |
agcacagaacaacaaaatcaaattnnnnnnngaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17597964 |
agcacagaacaacaaaatcaaattaaaaaaagaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa |
17597865 |
T |
|
| Q |
113 |
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17597864 |
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca |
17597765 |
T |
|
| Q |
213 |
cg |
214 |
Q |
| |
|
|| |
|
|
| T |
17597764 |
cg |
17597763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 31249233 - 31249396
Alignment:
| Q |
53 |
atgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaag-actgataggaacaggtttataattcatatacat-----------caattg |
140 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| |||||||| ||| ||| ||||||||| ||| |||||| |||||||| ||| || |
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| T |
31249233 |
atgccatttctaaagtaagtgtcaaaactagccttccatatgcagtaagtactaataggaacatgttcataatttatatacattatttaattatcaagtg |
31249332 |
T |
|
| Q |
141 |
aatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcat |
204 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||| |
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|
| T |
31249333 |
aatcattactttccacctttaatgtaatagttctcccggtaagattcttcacatatattttcat |
31249396 |
T |
|
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