View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_122 (Length: 208)
Name: NF11980_low_122
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_122 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 12150285 - 12150402
Alignment:
| Q |
75 |
tcaaaagtcactagctgattctttccatccaccagtctcctcctcttcattgtaactttgatcatcatttctctgcaaccaataattgatagtacatttt |
174 |
Q |
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| T |
12150285 |
tcaaaagtcactagctgattctttccatccaccagtctcctcctcttcattgtaactctgatcatcatttctctgcaaccaataattgatagtacatttt |
12150384 |
T |
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| Q |
175 |
aatagggagaaaaatatg |
192 |
Q |
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| T |
12150385 |
aatagggagaaaaatatg |
12150402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 12143302 - 12143419
Alignment:
| Q |
75 |
tcaaaagtcactagctgattctttccatccaccagtctcctcctcttcattgtaactttgatcatcatttctctgcaaccaataattgatagtacatttt |
174 |
Q |
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||||||||| ||||| |||| ||||||||| || ||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||||||||| |
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| T |
12143302 |
tcaaaagtccctagccgattgtttccatcctccggtctcctcctcttgattgtaactccgttcgtagtttctctgcaaccaataattgatagtacatttt |
12143401 |
T |
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| Q |
175 |
aatagggagaaaaatatg |
192 |
Q |
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|||||||||||||||||| |
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| T |
12143402 |
aatagggagaaaaatatg |
12143419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 12150135 - 12150199
Alignment:
| Q |
16 |
acagaacactatgatatcatcacaccagaaaacacaatgattaaagttcctaaatgttctcaaaa |
80 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12150135 |
acagaacactatgatatcatcacaccagaaaacacaatgattaaagttcctaaatgttctcaaaa |
12150199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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