View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_16 (Length: 542)
Name: NF11980_low_16
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 16 - 531
Target Start/End: Original strand, 5415166 - 5415681
Alignment:
| Q |
16 |
acattcaaccttgaaaatcctctttctccatcaaaatcaacaatcacaaacgtctttaaacatgaaaaccataacccaaacactagttaaccattctccc |
115 |
Q |
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| T |
5415166 |
acattcaaccttgaaaatcctatttctccatcaaaatcaacaatcacaaacgtctttaaacatgaaaaccataacccaaacactagttaaccattctccc |
5415265 |
T |
|
| Q |
116 |
aacacaggaaacaacatagaaaacaacacagataacaaaatggattgagaaaggcgaagaagaaattacaagaggaacaacatgnnnnnnnttacaagaa |
215 |
Q |
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| T |
5415266 |
aacacaggaaacaacatagaaaacaacacagataacaaaatggattgagaaaggcgaagaagaaattacaagaggaacaacatgaaaaaaattacaagaa |
5415365 |
T |
|
| Q |
216 |
gcaggaaaaatattacaagaaagaaagggagttccctgtcatcgaatgggtggaagatggatcaaaaccctatcttcccttttatataacaatacgaaga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5415366 |
gcaggaaaaatattacaagaaagaaagggagttccctgtcagcgaatgggtggaagatggatcaaaaccctatcttcccttttatataacaataccaaga |
5415465 |
T |
|
| Q |
316 |
acgcgttctttttctgctttgctatccacaccttactttctcttgaactgtttcctcactgtcgccgcaactcctcttgaccttgatccaattcgtattg |
415 |
Q |
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| T |
5415466 |
acgcgttctttttctgctttgctatccacaccttactttctcttgaactgtttcctcactgtcgccgcaactcctcttgaccttgatccaattcgtattg |
5415565 |
T |
|
| Q |
416 |
acccgaaagataattcacatgtcaaaatccccaacgaagccttcttcctctccaacagatttaaaatttcttcaagtttcctgaatttttatgttctctt |
515 |
Q |
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| T |
5415566 |
acccgaaagataattcacatgtcaaaatccccaacaaagccttcttcctctccaacagatttaaaatttcttcaagtttcctgaatttttatgttctctt |
5415665 |
T |
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| Q |
516 |
ttattgtcttgttcat |
531 |
Q |
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| T |
5415666 |
ttattgtcttgttcat |
5415681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 321 - 487
Target Start/End: Original strand, 18969477 - 18969643
Alignment:
| Q |
321 |
ttctttttctgctttgctatccacaccttactttctcttgaactgtttcctcactgtcgccgcaactcctcttgaccttgatccaattcgtattgacccg |
420 |
Q |
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| T |
18969477 |
ttcttcttctcctttactattcacaccccactttctcttcaaccgttttctcaccgtcgccgcaattcctcttgacccggatccaattcatattgaaccg |
18969576 |
T |
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| Q |
421 |
aaagataattcacatgtcaaaatccccaacgaagccttcttcctctccaacagatttaaaatttctt |
487 |
Q |
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| T |
18969577 |
gaagatgatccacatgtcaaaatccccatcaaagcgttcttcctctccaccaggtttaaaacttctt |
18969643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 18969385 - 18969434
Alignment:
| Q |
258 |
cgaatgggtggaagatggatcaaaaccctatcttcccttttatataacaa |
307 |
Q |
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| T |
18969385 |
cgaatgggtggaagatggatcaaaaccctatcatcccttttatataacaa |
18969434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 18969302 - 18969355
Alignment:
| Q |
143 |
acagataacaaaatggattgagaaaggcgaagaagaaattacaagaggaacaac |
196 |
Q |
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||||| |||||||||| ||||||||||||||||||| | |||||||| |||||| |
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| T |
18969302 |
acagaaaacaaaatgggttgagaaaggcgaagaagacaatacaagagcaacaac |
18969355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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