View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_17 (Length: 536)
Name: NF11980_low_17
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Complemental strand, 32416931 - 32416428
Alignment:
| Q |
17 |
atcaaatgaacacatatgttattataatgtaggctgcaagatcagaaattttcaagaatatgctagagattgatgaatgtaaagctgcaccaacttgtaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32416931 |
atcaaatgaacacatatgttattataatgtaggctgcaagatcagaaattttcaagaatatgctagagattgatgaatgtaaagctgcaccaacttgtaa |
32416832 |
T |
|
| Q |
117 |
cacaataactatacctgacctaaaccatgaagaactagaatctctcctagagtttctctacagtggtacattacctttggaaaaattggagaaacatgtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32416831 |
cacaataactatacctgacctaaaccatgaagaactagaatctctcctagagtttctctacagtggtacattacctttggaaaaattggagaaacatgtg |
32416732 |
T |
|
| Q |
217 |
tatgccttgtcacaagcagctgataagtatattatcccacatttgctgaaatactgtgaaagatacttgttcagctcacttagtacttctaatgcatttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32416731 |
tatgccttgtcacaagcagctgataagtatattatcccacatttgctgaaatactgtgaaagatacttgttcagctcacttagtacttctaatgcatttg |
32416632 |
T |
|
| Q |
317 |
agacactagaaattgctgatacctgttcaaaccaagatttgaaggagacaacctttaatttcttagttaaaaatattgagcatatggttacttctcctaa |
416 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
32416631 |
agacactagaaattgctgatacttgttcaaaccaagatttgaaggagacaacctttaatttcttagttaaaaatattgggcttatggttacttctcctaa |
32416532 |
T |
|
| Q |
417 |
atttgaagcttttgtgcataggagtccacatttaactgtgcaattagtttcaagagcatttgtgaatggttccaagttatcaatttctctataagtggaa |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32416531 |
atttgaagcttttgtgcataggagtccacatttaactgtgcaattagtttcaagagcatttgtgaatggttccaaattatcaatttctctataagtggaa |
32416432 |
T |
|
| Q |
517 |
gagg |
520 |
Q |
| |
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|||| |
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| T |
32416431 |
gagg |
32416428 |
T |
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