View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_20 (Length: 529)

Name: NF11980_low_20
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_20
NF11980_low_20
[»] chr4 (3 HSPs)
chr4 (174-371)||(49766980-49767177)
chr4 (395-507)||(49767202-49767314)
chr4 (1-75)||(49766804-49766881)
[»] chr2 (1 HSPs)
chr2 (176-222)||(14137707-14137753)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 7e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 174 - 371
Target Start/End: Original strand, 49766980 - 49767177
Alignment:
Q  174 cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttctgtatggatgatcaatgcattgcatgccatcaatggaatcatc 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49766980 cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttctatatggatgatcaatgcattgcatgccatcaatggaatcatc 49767079  T
Q  274 ttcaacaccaatgttaactcttnnnnnnnnnnnnnnnnntcctttcataggttccatgtggaggatgtgaatcatccaaatctaaaataatagtatct 371  Q
    ||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49767080 ttcaacaccaatgttaactcttccaccaccaccacctcctcctttcataggttccatgtggaggatgtgaatcatccaaatctaaaataatagtatct 49767177  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 395 - 507
Target Start/End: Original strand, 49767202 - 49767314
Alignment:
Q  395 ttggtttggttgatgagaaagtagtagataggtagattttgctttatgtaatagattgtgttgtactttgtgttagggactgtcttgaatgccttttagc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49767202 ttggtttggttgatgagaaagtagtagataggtagattttgctttatgtaatagattgtgttgtactttgtgttagggactgtcttgaatgccttttagc 49767301  T
Q  495 tagtttagctctg 507  Q
    |||||||||||||    
T  49767302 tagtttagctctg 49767314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 49766804 - 49766881
Alignment:
Q  1 agaagaagatgaagttacagcagttgtagctgatacagtgttgatg---gaagaagaagaaggacaatgacgagtagt 75  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||    
T  49766804 agaagaagatgaagttacagcagttgttgctgatacagtgttgatggaagaagaagaagaaggacaatgacgagtagt 49766881  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 14137753 - 14137707
Alignment:
Q  176 agtttaccaagtttttcttgaagacaaaaagcacagatcccaccagg 222  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  14137753 agtttaccaagtttttcttgaagacaaaaagcacatataccaccagg 14137707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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