View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_22 (Length: 517)
Name: NF11980_low_22
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 13 - 500
Target Start/End: Original strand, 14881546 - 14882033
Alignment:
| Q |
13 |
gatgaagaggaggagaaaacacactctaattcactgcctttcttcagaagttcttgcctatttctcaagaagattttcactgcaagaacaagtagtgcaa |
112 |
Q |
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| T |
14881546 |
gatgaagaggaggagaaaacacactctaattcactgcctttcttcagaagttcttgcctatttctcaagaagattttcactgcaagaacaagtagtgcaa |
14881645 |
T |
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| Q |
113 |
ttgcagctagagttgacaaggcagagattataatcactgatttctcacttaacctcgatagcctattacgggaagcaccacagctaccaagagaggctcc |
212 |
Q |
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| T |
14881646 |
ttgcagctagagttgacaaggcagagattataatcactgatttctcacttaacctcgatagcctattacgggaagcaccacagctaccaagagaggctcc |
14881745 |
T |
|
| Q |
213 |
acaaagatgaaggtttcctacaaatgcctcgtatggccagcgggagaatcgcttattcaatgcaccttgaaagttattataagagatatccagcttttcc |
312 |
Q |
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| T |
14881746 |
acaaagatgaaggttacctacaaatgcctcgtaaggccagcgggagaatcgcttattcaatgcaccttgaaagttattataagagatatccagcttttcc |
14881845 |
T |
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| Q |
313 |
aagctactcatttcaccgatgtttgaaggaacttctccagtgagttgattgtgagatagatcaagtgcttccaatttccccaacgtgccaacagaaaatg |
412 |
Q |
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| T |
14881846 |
aagctaatcatttcaccgatgtttgaaggaacttctccagtgagttgattgtgagatagatcaagtgcttccaatttcgccaacgtgccaacagaaaatg |
14881945 |
T |
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| Q |
413 |
gaacctgaccagagagattattgtaactgaggtctaaagcaacttggagattttgaagactcccaacctcatctggtatgtcaccact |
500 |
Q |
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| T |
14881946 |
gaacctgaccagagagattattgtaactgaggtctaaagcaacttggagattttgaagactcccaacatcatctggtatgtcaccact |
14882033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 389
Target Start/End: Complemental strand, 39006054 - 39005875
Alignment:
| Q |
210 |
tccacaaagatgaaggtttcctacaaatgcctcgtatggccagcgggagaatcgcttattcaatgcaccttgaaagttattataagagatatccagcttt |
309 |
Q |
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||||||||||| ||||||||| ||||||| || | |||||| ||||| || ||| | |||| ||||||| || || ||||||| ||| |||||| |
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| T |
39006054 |
tccacaaagatttaggtttccttcaaatgcgtcatctggccaccgggaaaacttcttgtccaatttcccttgaagattgttgtaagagagatcaagcttt |
39005955 |
T |
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| Q |
310 |
tccaagctactcatttcaccgatgtttgaaggaacttctccagtgagttgattgtgagatagatcaagtgcttccaattt |
389 |
Q |
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| T |
39005954 |
tccaagctgctcatatcacccacttgtggagggatttttccagtaagttgattgtgggaaagatcaagtgtttccaattt |
39005875 |
T |
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