View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_23 (Length: 515)
Name: NF11980_low_23
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 20 - 419
Target Start/End: Complemental strand, 36053027 - 36052628
Alignment:
| Q |
20 |
atcaaaatattaaggaattttcccttataaagcatcacctccatgactgcaacaactgaatcaaactctaccttgttagataaatgttgcttggaatttg |
119 |
Q |
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| T |
36053027 |
atcaaaatattaaggaattttcccttataaagcatcacctccatgactgcaacaactgaatcaaactctaccttgttagataaatgttgcttggaatttg |
36052928 |
T |
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| Q |
120 |
aagttgtcttgtaagagaaaatatcatcaatgtgatgcagattatgtaaggatagtaaggaacaaaatggagctgcaaccattaagcaaaatatgtttat |
219 |
Q |
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| T |
36052927 |
aagttgtcttgtaagagaaaatatcatcaatgtgatgcggattatgtaaggatagtaaggaacaaaatggagctgcaaccattaagcaaaatatgtttat |
36052828 |
T |
|
| Q |
220 |
gccccaatcaacaacctcccctgtcccttttgttgaatcaaataaccttgggtaacaaaattcgctccgacaatgtatagcataaatcaaaaggaggttc |
319 |
Q |
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| T |
36052827 |
gccccaatcaacaacctcccctgtcccttttgttgaatcaaataaccttgggtaacaaaattcgctccgacaatgtatagcataaatcaaaaggaggttc |
36052728 |
T |
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| Q |
320 |
aaatcatgcaaaacatcatcccaatacaagggaacagacccacaaattccaaagaacccatcagcatgcataaggacatttacaaatgttgagaacctat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36052727 |
aaatcatgcaaaacatcatcccaatacaagggaacagacccacaaattccaaagaacccatcagcatgcataaggacatttacaaatgttgagaacctat |
36052628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 422 - 498
Target Start/End: Complemental strand, 36052598 - 36052522
Alignment:
| Q |
422 |
ttaaatacatagccaagtagagaaaggagtctaccttccacgctagaattttccaaaaataattggtttgccttatc |
498 |
Q |
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| T |
36052598 |
ttaaatacatagccaagtagagaaaggagtctaccttccacgctagaattttccaaaaataattggtttgccttatc |
36052522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 177 - 401
Target Start/End: Complemental strand, 6072595 - 6072371
Alignment:
| Q |
177 |
aggaacaaaatggagctgcaaccattaagcaaaatatgtttatgccccaatcaacaacctcccctgtcccttttgttgaatcaaataaccttgggtaaca |
276 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||||||||||| |
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| T |
6072595 |
aggaacaatatggagctgcaactattaagcaaaatatgtttatgccccaatcaacaacctcccctatcagttttgtcgaatcaaacaaccttgggtaaca |
6072496 |
T |
|
| Q |
277 |
aaattcgctccgacaatgtatagcataaatcaaaaggaggttcaaatcatgcaaaacatcatcccaatacaagggaacagacccacaaattccaaagaac |
376 |
Q |
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| T |
6072495 |
aaatttgctcccacaatgtgtaacataaagcaaaagtaggttcaaatcatgcaaaacatcattgcaatagaagtgaacaaacccacaaattccaaagaac |
6072396 |
T |
|
| Q |
377 |
ccatcagcatgcataaggacattta |
401 |
Q |
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| T |
6072395 |
tcatcagcatgcttatggacattta |
6072371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 13924217 - 13924132
Alignment:
| Q |
225 |
aatcaacaacctcccctgtcccttttgttgaatcaaataaccttgggtaacaaaattcgctccgacaatgtatagcataaatcaaa |
310 |
Q |
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|||||||||||| |||| | ||||||||||||||| ||||||||||||||||||| ||||| |||| | ||||||| |||||| |
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| T |
13924217 |
aatcaacaaccttccctattgcttttgttgaatcaagcaaccttgggtaacaaaatttgctcccacaaaatgtagcatatatcaaa |
13924132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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