View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_24 (Length: 515)
Name: NF11980_low_24
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 35048417 - 35047936
Alignment:
| Q |
18 |
atgtttatatgtaatctttccaggggcacttttattatttgttgttttctttttcacaagttcaatatactcacaaagctacagagaggtaaatatgttc |
117 |
Q |
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| T |
35048417 |
atgtttatatgtaatctttccaggggcacttttattatttgttgttttctttttcacaagttcaatatactcacaaagctacagagaggtaaatatgttc |
35048318 |
T |
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| Q |
118 |
ttttttctttgataaaattcagaaacctatgaatttgactttgactttgaccgagtaaaatttgcgttcttccaaatttctaaatggttggttggtttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35048317 |
ttttttctttgataaaattcagaaacctatgaatttgactttgactttgaccgagtaaaatttgtgttcttccaaatttctaaatggttggttggtttat |
35048218 |
T |
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| Q |
218 |
tgatcttgtgttatgcagaaactatcaagcttcaaaaatggtgtaggtcagaatgtgcatacttatgataaatgcagggtttgttttctcttaatacttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35048217 |
tgatcttgtgttatgcagaaactatcaagcttcaaaaatggtgtaggtcagaatgtgcacacttatgataaatgcagggtttgttttctcttaatacttt |
35048118 |
T |
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| Q |
318 |
tggttctgtctcttgatcatgtattattttggatgtttaggtttggtgcttatatctgtttatcttgtttagtagaagcagtgcaggcctagtggaagtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35048117 |
tggttctgtctcttgatcatgtattattttggatgtttaggtttggtgcttatatctgtttatcttgtttagtagaagcagtgcaggcctagtggaagtg |
35048018 |
T |
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| Q |
418 |
aagcgttacctcagggtatagtctcgagtacttccagtttggagttgagacctttatggatgtctaagaatggtcatcattt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35048017 |
aagcgttacctcagggtatagtctcgagtacttccagtttggagttgagacctttatggatgtctaagaatggtcatcattt |
35047936 |
T |
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