View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_26 (Length: 512)
Name: NF11980_low_26
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 39825206 - 39825531
Alignment:
| Q |
1 |
gtatatggtagtagataccttagtcattgggaagagatccaatttttggagtagagtttatgtgaaaaattctgcacatgaatcaaaggaagaaagaaaa |
100 |
Q |
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| T |
39825206 |
gtatatggtagtagataccttagtcattgggaagagatccaatttttggagtagagtttatgtgaaaaattctgcacatgaatcaaaggaagaaagaaaa |
39825305 |
T |
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| Q |
101 |
agg-acgtttcaggtttataagtggggataataatattcttgtttcttgctaaaagagactcatcatgaataaactcatatcccgaaaaaacatatttga |
199 |
Q |
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| T |
39825306 |
agggacgtttcaggtttataagtggggataataatattcttgtttcttgctaaaagagactgatcatgaataaactcatatcccgaaaaaacatatttga |
39825405 |
T |
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| Q |
200 |
agtcaaattaagtaaaagagaccgttcttaaaaaaggtaacaggctttatcagatatgtactgaaaaacagaaatcattttcatggctacaaaagagaaa |
299 |
Q |
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| T |
39825406 |
agtcaaattaagtaaaagagaccgttcttaaaaaaggtaacaggctttatcagatatgtactgaaaaacagaaatcattttcatggctacaaaagagaaa |
39825505 |
T |
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| Q |
300 |
gatacccttttcttctgaggttagga |
325 |
Q |
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| T |
39825506 |
gatacccttttcttctgaggttagga |
39825531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 382 - 500
Target Start/End: Original strand, 39825584 - 39825700
Alignment:
| Q |
382 |
tacctgtaatctgtaaattgtagtattggattttggtggcatgtgaagtagccggccacaaaattgtttgtatttgagagttgagattttgtcgtgtatt |
481 |
Q |
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| T |
39825584 |
tacctgtaatctgtaaattgtagtattggattttggtggcatgtgaagtagccggccacaaaattgtttgtattt--gagttgagattttgtcgtgtatt |
39825681 |
T |
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| Q |
482 |
tgattcactctttcatctc |
500 |
Q |
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| T |
39825682 |
tgattcactctttcatctc |
39825700 |
T |
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