View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_27 (Length: 510)
Name: NF11980_low_27
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Original strand, 9471311 - 9471788
Alignment:
| Q |
20 |
tgcagcaaacctcctaatataacagtaaagcaagataagtccatcatcattttaacaaaacttgcatggtaataagatgaaaaattccattatttcggat |
119 |
Q |
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| T |
9471311 |
tgcagcaaacctcctaatataacagtaaagcaagataagtccatcatcattttaacaaaacttgcatggtaataagatgaaaaattccattatttcggat |
9471410 |
T |
|
| Q |
120 |
ctacaacacagacacctgacacgacagagacaccgtggcatgtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaacc |
219 |
Q |
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| T |
9471411 |
ctataacgcagacacctgacacgacagagacaccgtggcatgtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaacc |
9471510 |
T |
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| Q |
220 |
acatctgataatgtggcgtcggacttctgtcgaacactaaacattccaataatctgaattgtcaatgctacataatttctgttttggttattaaaattgc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9471511 |
acatctgataatgtggcgtcggacttctgtcgaacactaaacattccaataatctgaattgtcaatgctacataatttctgttttggtttttaaaattgc |
9471610 |
T |
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| Q |
320 |
aaaattcaaacacttgtctcagtatctttgtgttttcttatggtcaaccaatccagaaattcaattcacactaaagggtctatgaaccaaaccagaaact |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9471611 |
aaaattcaaacacttgtctcagtatctttgtgttttcttatggtcaaccaatccagaaattcaaatcacactaaagggtctatgaaccaaaccagaaact |
9471710 |
T |
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| Q |
420 |
taaatcatcaattcctcacctagtgatgggtcgatgaaccggatccgcttgtttcttctcacaaacattatttctcct |
497 |
Q |
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| T |
9471711 |
taaatcatcaattcctcacctagtgatgggtcgatgaaccggatccgcttgtttcttctcacaaacattatttctcct |
9471788 |
T |
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