View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_29 (Length: 477)
Name: NF11980_low_29
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 21 - 459
Target Start/End: Complemental strand, 7796448 - 7796007
Alignment:
| Q |
21 |
agacgcatatatttttattattacattcgaaatgcaactggacattttttgaaacacagaaaatcctatgtagtagtaatacacaaaacttgcaacagaa |
120 |
Q |
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| T |
7796448 |
agacgcatatatttttattattacattcgaaatgcaactggacattttttgaaacacagaaaatcctatgtagtagtaatacacaaaacttgcaacagaa |
7796349 |
T |
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| Q |
121 |
ttattaaactctacaatgactagtcccattctccacaattatgagtaaagctatttacattatgatcccttcatacatgtcttatagtcaaatccacaca |
220 |
Q |
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| T |
7796348 |
ttattaaactctacaatgactagtcccattctccacaattatgagtaaagctatttacattatgatcccttcatacatgtcttatagtcacatccacaca |
7796249 |
T |
|
| Q |
221 |
aacccattactccataaatgcatccatcatatgatactccatttggaaagatatctactctgtggctgcaagaactgctggcccttccacctgttaattc |
320 |
Q |
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| T |
7796248 |
aacccattactccataaatgcatccatcatatgatactccatttggaaagatatctactctgtggctgcaagaactgctggcccttccacctgttaattc |
7796149 |
T |
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| Q |
321 |
atcaccacaaaatagaacataagattttaatgcaacatacaagataaatagctcaatactataaaataactttcggaagtaaattcaaaaataa---ann |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7796148 |
atcaccacaaaatagaacataagattttaatgcaacatacaagataaatagctcaatactataaaataactttcggaagtaaattcaaaaataatttttt |
7796049 |
T |
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| Q |
418 |
nnnnngtaagttaactaccttgaaggttgcaccccaaatttc |
459 |
Q |
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| T |
7796048 |
tttttttaagttaactaccttgaaggttgcaccccaaatttc |
7796007 |
T |
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