View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_low_31 (Length: 455)
Name: NF11980_low_31
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 86 - 435
Target Start/End: Original strand, 46017558 - 46017907
Alignment:
| Q |
86 |
aatcataatgcaatttttacaagcaaatgacaaagcagccccaggccatccaactgctagctaactgggtattatacacattgacacaatatatatgcta |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46017558 |
aatcataatgcaatttttacaagcaaatgacaaagcagccccaggccatccaactgctagctaactgggtattatacacattgacacaatatatatgcta |
46017657 |
T |
|
| Q |
186 |
gttcttacttcttagtctatagggtcttctacttatagtcttttatatttcaatctagaggagtatatattgttaacagacagtttataacagcttcata |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46017658 |
gttcttacttcttagtctatagggtcttctacttatagtcttttatatttcaatctagaggagtatatattgttaacagacagtttataacagcttcata |
46017757 |
T |
|
| Q |
286 |
ctttttgcttacaggatcttctcattgcacttagtatcgagaataattaaaccagtattttttgagtaagcaaaaagaatgaaccaagggaaatgaaagt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46017758 |
ctttttgcttacaggatcttctcattgcacttagtatcgagaagaattaaaccagtattttttgagtaagcaaaaagaatgaaccaagggaaatgaaagt |
46017857 |
T |
|
| Q |
386 |
taatacagatcataaaacagttgtgccctctttctagctacatacaacat |
435 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46017858 |
taatacagatcataaaacagttttgccctctttctagctacatacaacat |
46017907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 46017344 - 46017406
Alignment:
| Q |
11 |
tgagatgaatatcgaactgtacgtgtttcgttttgttgagcaaacataaaaacaacggtaaat |
73 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46017344 |
tgagctgaatatcgaactgtacgtgtttcgttttgttgagcaaacataaaaacaacggtaaat |
46017406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University