View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_32 (Length: 450)

Name: NF11980_low_32
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_32
NF11980_low_32
[»] chr3 (4 HSPs)
chr3 (23-184)||(38938503-38938664)
chr3 (329-426)||(38937626-38937723)
chr3 (195-291)||(38937725-38937821)
chr3 (26-156)||(7052435-7052565)
[»] chr6 (12 HSPs)
chr6 (24-175)||(16658863-16659014)
chr6 (23-183)||(18872331-18872492)
chr6 (24-156)||(16798023-16798155)
chr6 (24-156)||(17070360-17070492)
chr6 (57-175)||(16867161-16867279)
chr6 (23-129)||(18586904-18587010)
chr6 (23-129)||(18793823-18793929)
chr6 (55-156)||(16839367-16839468)
chr6 (24-156)||(16988302-16988434)
chr6 (60-157)||(16781992-16782089)
chr6 (31-109)||(18869929-18870007)
chr6 (31-119)||(16790232-16790320)
[»] chr8 (1 HSPs)
chr8 (23-183)||(13378950-13379111)
[»] scaffold0511 (1 HSPs)
scaffold0511 (23-129)||(10212-10318)
[»] scaffold0230 (1 HSPs)
scaffold0230 (23-129)||(5532-5638)
[»] scaffold0144 (1 HSPs)
scaffold0144 (40-157)||(38357-38474)
[»] scaffold0133 (2 HSPs)
scaffold0133 (60-157)||(9394-9491)
scaffold0133 (60-157)||(13742-13839)
[»] scaffold0256 (1 HSPs)
scaffold0256 (60-157)||(10037-10134)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 38938664 - 38938503
Alignment:
Q  23 gacagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38938664 gacagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtt 38938565  T
Q  123 tcaatcaggatttcaagtaaagcgtaagccattttgttggtatgagaacagaatgaatcaag 184  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  38938564 tcaatcaggatttcaagtaaagcgtcagccattttgcaggtatgagaacagaatgaatcaag 38938503  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 38937723 - 38937626
Alignment:
Q  329 ttgtaacaacctctacgcaaacaagtaaacgagccatttttgtccaaaggatatcatagatggaagatctatcactcggcaccaccgcagccaacata 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38937723 ttgtaacaacctctacgcaaacaagtaaacgagccatttttgtccaaacgatatcatagatggaagatctatcactcggcaccaccgcagccaacata 38937626  T

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Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 195 - 291
Target Start/End: Complemental strand, 38937821 - 38937725
Alignment:
Q  195 acttagaaaagaccaaatgcgtctgaagactccacatcccacaaaaagatggtatgcacttgtacacaaacctgaattagcctcgataactccacga 291  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  38937821 acttggaaaagaccaaatgcgtctgaagactccacatcccacaaaaagatggtatgaacttgtacacaaacctgaattagccttgataactccacga 38937725  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 7052565 - 7052435
Alignment:
Q  26 agcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtttca 125  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||| |||||||||||||| || ||| | ||||||| |||||    
T  7052565 agcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacacccaaaaaggatgcaagctcctctcgaaaaaaagatccgaggttttca 7052466  T
Q  126 atcaggatttcaagtaaagcgtaagccattt 156  Q
    |||| | || |||||||| | | ||||||||    
T  7052465 atcacggttccaagtaaaacatcagccattt 7052435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 16658863 - 16659014
Alignment:
Q  24 acagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggttt 123  Q
    |||||||||||||||||||||||||||  |||| | |||||||| ||||||||||||||| ||| ||||| |||||||| |||||| | ||||||| |||    
T  16658863 acagcacgaattgcagtgagatttccagatagcctttgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccgaggtttt 16658962  T
Q  124 caatcaggatttcaagtaaagcgtaagccattttgttggtatgagaacagaa 175  Q
    | |||| |||| |||||||||| | ||||||||||| |||||||||||||||    
T  16658963 ctatcacgattccaagtaaagcttcagccattttgtaggtatgagaacagaa 16659014  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 18872492 - 18872331
Alignment:
Q  23 gacagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtt 122  Q
    ||||||||||||||| ||||||||||||| |||||| || ||||| ||| ||||||||||| |||| | ||||||||||| |||||| | ||||||| ||    
T  18872492 gacagcacgaattgcggtgagatttccacatagcttttgtgtcaattcttcaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggttt 18872393  T
Q  123 tcaatcaggatttcaagtaaagcgtaagccattttgttggtatgagaacag-aatgaatcaa 183  Q
    | |||||   || |||||||| | | ||||||||||  |||| |||||||| ||||||||||    
T  18872392 tgaatcacagttccaagtaaaacatcagccattttgcaggtacgagaacagaaatgaatcaa 18872331  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 16798023 - 16798155
Alignment:
Q  24 acagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggttt 123  Q
    |||||||| ||||  ||||| ||| ||  ||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |||||| | ||||||| |||    
T  16798023 acagcacggattgtggtgaggttttcatttagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccgaggtttt 16798122  T
Q  124 caatcaggatttcaagtaaagcgtaagccattt 156  Q
    |||||| |||| ||| |||||||| ||||||||    
T  16798123 caatcacgattccaattaaagcgtcagccattt 16798155  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 17070360 - 17070492
Alignment:
Q  24 acagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggttt 123  Q
    |||||||| ||||  ||||| ||| ||  ||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |||||| | ||||||| |||    
T  17070360 acagcacggattgtggtgaggttttcatttagcttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccgaggtttt 17070459  T
Q  124 caatcaggatttcaagtaaagcgtaagccattt 156  Q
    |||||| |||| |||||||||| | ||||||||    
T  17070460 caatcacgattccaagtaaagcttcagccattt 17070492  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 16867279 - 16867161
Alignment:
Q  57 ttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtttcaatcaggatttcaagtaaagcgtaagccattt 156  Q
    ||||||||||| ||||||||||||||| ||| ||||| |||||||| |||||| | ||| ||| |||| |||| |||| |||  ||||| | ||||||||    
T  16867279 ttctgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccaaggttttctatcacgattccaatcaaagcttcagccattt 16867180  T
Q  157 tgttggtatgagaacagaa 175  Q
    ||| |||||||||||||||    
T  16867179 tgtaggtatgagaacagaa 16867161  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 18587010 - 18586904
Alignment:
Q  23 gacagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtt 122  Q
    ||||||||||||||| ||||||||||||| || ||| || ||||| ||||||||||||||| |||| | ||||||||||| |||||| | ||||||| ||    
T  18587010 gacagcacgaattgcggtgagatttccacataacttttgtgtcaattctccaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggatt 18586911  T
Q  123 tcaatca 129  Q
    | |||||    
T  18586910 tgaatca 18586904  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 18793929 - 18793823
Alignment:
Q  23 gacagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtt 122  Q
    ||||||||||||||| ||||||||||||| || ||| || ||||| ||||||||||||||| |||| | ||||||||||| |||||| | ||||||| ||    
T  18793929 gacagcacgaattgcggtgagatttccacataacttttgtgtcaattctccaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggatt 18793830  T
Q  123 tcaatca 129  Q
    | |||||    
T  18793829 tgaatca 18793823  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 16839367 - 16839468
Alignment:
Q  55 gcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtttcaatcaggatttcaagtaaagcgtaagccat 154  Q
    |||| |||||||| ||||||||||||||| ||| ||||| |||||||| |||||| | ||||||| ||||||||| |||| ||| |||||||| ||||||    
T  16839367 gcttatgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccgaggttttcaatcacgattccaattaaagcgtcagccat 16839466  T
Q  155 tt 156  Q
    ||    
T  16839467 tt 16839468  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 16988302 - 16988434
Alignment:
Q  24 acagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggttt 123  Q
    |||||||| ||||  ||||| ||| ||  ||| ||||||||||| | | ||||||||||| ||| |||||||||||||| ||||||   ||||||| |||    
T  16988302 acagcacggattgtggtgaggttttcatttagtttctgggtcaatttttcaacacccaaaaaggatgcaagctcctctcgaacaaaatatccgaggtttt 16988401  T
Q  124 caatcaggatttcaagtaaagcgtaagccattt 156  Q
    |||||| |||| |||||||||||| ||||||||    
T  16988402 caatcacgattccaagtaaagcgtcagccattt 16988434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 16781992 - 16782089
Alignment:
Q  60 tgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtttcaatcaggatttcaagtaaagcgtaagccatttt 157  Q
    |||||||| |||||||||||||||||||| ||||||||||||   ||||| | ||||||| ||| ||||| |||  |||||||||| | |||||||||    
T  16781992 tgggtcaattctccaacacccaaataggtagcaagctcctcttgtacaaaagatccgaggttttgaatcacgataccaagtaaagcatcagccatttt 16782089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 18870007 - 18869929
Alignment:
Q  31 gaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaa 109  Q
    ||||||| ||||||||||||| |||||| || ||||| ||| ||||||||||| |||| | ||||||||||| ||||||    
T  18870007 gaattgcggtgagatttccacatagcttttgtgtcaattcttcaacacccaaaaaggtcgaaagctcctctcgaacaaa 18869929  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 16790232 - 16790320
Alignment:
Q  31 gaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagg 119  Q
    |||||||||||||||||||   |||| | |||||||| || |||||||||||| ||| |||||||||||||  |||||| | |||||||    
T  16790232 gaattgcagtgagatttccggatagcctttgggtcaattccccaacacccaaaaaggatgcaagctcctcttgaacaaaagatccgagg 16790320  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 13378950 - 13379111
Alignment:
Q  23 gacagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtt 122  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||| | |  |||||| | ||| ||| ||    
T  13378950 gacagcccgaattgcagtgagatttccacatagcttctgggtcaattctccaacacccaaaaaggttgaaagctcttgttgaacaaaagatccaaggttt 13379049  T
Q  123 tcaatcaggatttcaagtaaagcgtaagccattttgttggtatgagaacag-aatgaatcaa 183  Q
    | |||||   || |||||||| | | ||||||||||  ||||||| ||||| ||||||||||    
T  13379050 tgaatcacagttccaagtaaaacatcagccattttgcaggtatgataacagaaatgaatcaa 13379111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 10212 - 10318
Alignment:
Q  23 gacagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtt 122  Q
    ||||||||||||||| ||||||||||||| || ||| || ||||| ||||||||||||||| |||| | ||||||||||| |||||| | ||||||| ||    
T  10212 gacagcacgaattgcggtgagatttccacataacttttgtgtcaattctccaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggatt 10311  T
Q  123 tcaatca 129  Q
    | |||||    
T  10312 tgaatca 10318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 5532 - 5638
Alignment:
Q  23 gacagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtt 122  Q
    ||||||||||||||| ||||||||||||| || ||| || ||||| ||||||||||||||| |||| | ||||||||||| |||||| | ||||||| ||    
T  5532 gacagcacgaattgcggtgagatttccacataacttttgtgtcaattctccaacacccaaaaaggtcgaaagctcctctcgaacaaaagatccgaggatt 5631  T
Q  123 tcaatca 129  Q
    | |||||    
T  5632 tgaatca 5638  T

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Target: scaffold0144 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 38357 - 38474
Alignment:
Q  40 tgagatttccacgtagcttctgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtttcaatcaggatttcaag 139  Q
    |||| |||||||| ||||||| |||||| ||||||||||||||| ||| ||||||||| |||| ||||||   ||||||  ||||||||| |||| ||||    
T  38357 tgagttttccacgcagcttctcggtcaattctccaacacccaaaaaggatgcaagctcatctcgaacaaaatgtccgagattttcaatcacgattgcaag 38456  T
Q  140 taaagcgtaagccatttt 157  Q
    ||||||||  ||||||||    
T  38457 taaagcgtcggccatttt 38474  T

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Target: scaffold0133 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 9394 - 9491
Alignment:
Q  60 tgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtttcaatcaggatttcaagtaaagcgtaagccatttt 157  Q
    |||||||| |||||||||||||||||||| ||||||||||||   ||||||| ||||||| ||| ||||| |||| |||||||||| | |||||||||    
T  9394 tgggtcaattctccaacacccaaataggtagcaagctcctcttgtacaaatgatccgaggttttgaatcaagattccaagtaaagcatcagccatttt 9491  T

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Target: scaffold0133; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 13742 - 13839
Alignment:
Q  60 tgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtttcaatcaggatttcaagtaaagcgtaagccatttt 157  Q
    |||||||| |||||||||||||||||||| |||| |||||||   ||||||| ||||||| ||| ||||| |||| |||||||||| | |||||||||    
T  13742 tgggtcaattctccaacacccaaataggtagcaaactcctcttgtacaaatgatccgaggttttgaatcaagattccaagtaaagcatcagccatttt 13839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 10037 - 10134
Alignment:
Q  60 tgggtcaactctccaacacccaaataggttgcaagctcctctccaacaaatgttccgagggtttcaatcaggatttcaagtaaagcgtaagccatttt 157  Q
    |||||||| |||||||||||||||||||| |||| |||||||   ||||||| ||||||| ||| ||||| |||| |||||||||| | |||||||||    
T  10037 tgggtcaattctccaacacccaaataggtagcaaactcctcttgtacaaatgatccgaggttttgaatcaagattccaagtaaagcatcagccatttt 10134  T

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