View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_34 (Length: 438)
Name: NF11980_low_34
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_34 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 122825 - 123230
Alignment:
| Q |
19 |
aacaaatattaaatacataagaatacattttatatgatgtaaaagcaaaatatataatttacctcgcctgtaccaacattctgaatagggagagcttgat |
118 |
Q |
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| T |
122825 |
aacaaatattaaatatgtaagaatacattttatatgatgtaaa-gcaaaatatataatttacctcgcctgtaccaacattctgaatagggagagcttgat |
122923 |
T |
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| Q |
119 |
ccttctnnnnnnnnnttaaaagattgtcttagtaacatatttagaattggtatgttgacaaatgtttgttgcaacatagatgtatgactcattgtaaaag |
218 |
Q |
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| T |
122924 |
ccttctaaaaaaaa-ttaaaagattgtcttagtaacatatttagaattggtatgttgacaaatgtttgttgtaacatagatgtatgactcattgtaaaag |
123022 |
T |
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| Q |
219 |
gaatactttccagtacctctgctatttcaacattctcaataggcacattttgatcggtctaaacataaagtataaacgcgtgttaataatttaaattaga |
318 |
Q |
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| T |
123023 |
gaatactttccagtacctctgctatttcaacattctcaataggcacattttgatcggtctaaacataaagtataaacgcgtgttaataatttaaattaga |
123122 |
T |
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| Q |
319 |
attcttatattcacaaatgtttttgcaacagacatgtaagattgaaatgagtttataacctcattttttaggaacaattctttggtcttttctatcaaac |
418 |
Q |
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| T |
123123 |
attcttatattcacaaatgtttttgcaacaaacatgtaagattgagatgagtttgtaacctcattttttgggaacaattctttgatcttttctatcaaac |
123222 |
T |
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| Q |
419 |
cttcatct |
426 |
Q |
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| T |
123223 |
cttcatct |
123230 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 22077956 - 22078006
Alignment:
| Q |
376 |
acctcattttttaggaacaattctttggtcttttctatcaaaccttcatct |
426 |
Q |
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| T |
22077956 |
acctcattttttgggaacaatgctttgatcttttcaattaaaccttcatct |
22078006 |
T |
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